Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g00880 ATGGAGTTCGTGGGAAAAACCGTTAGGAAAGAGGTGAAGGGGGTTGGGTTTATCACTGGAACAGTGAAATCCTACGACCCTTCCTCTGGTTTTTTCGAGATCGTTTACGATGATGGTGATTCTGAGGAATTGGAGTCTTCCCAGGTGGCTTCTCTACTTCAATTTCAACCGGGGAGTGTCAAGGCCAAGCCCCGGGTTGGTCGGAAACCTAAGAAGCGGCGCCGCCGCGTTGAGCAGAAGCCGGATGCTGAAGCCAGTTCAGGTAATGTTGGCGATAATTTGGTGGAGGAGGGTAGTGCTTTTAGGGGGGATTTGGATGGAAATGTTTCTTCTGCTAGTGGTGGGGATTTGGATTTAGGGTGTGAGGGGATTGATAGAACCATTGATGTTGATGTTGGGAATGGAGGGAATTCTATTGGCAATGTTAATGGGAGTGTGAAGGAAAACGGGGGTGGAGAGGAAATTGGTTTTGAGGATGGTTTGAACAAGAGTGTCTCTGCTAATGGTAGTTGTGTCAAGGATGGGCTTGATTTGAATGCTAGGCTTAATCTCAATGAGGATTTTAATCTGAATGATGCTTGTAGTTTACCTCTTGACACCGAGGATGGTTTGAATAGAAGAGATTGTATTGATTTGAATTTGGATGTGAGTAATGAAGATGATGTTGGCGTGAATTCGGGTTACCTGGGTCGTTTGGGTGGGGAGGCATTGCAGCGGGAATGTAATTTTGATTTGAATGTCGAGGTGTGTGAGGAAGGTAGGGAAACTCGGTGTGATGATGACGGAAATGGACATTCTGAGGTAGGTGATGCTTTGTTTAGTAGGATGGGGCAGCTCCAAAATGAAGAAGAGGTAAATGTTAATAATAGTTCTGTAGAAGATGACGGAGTTAATGGTAATTTGAATCATGTGTCTGATGCTGTCAAATTGGAGGGAGTTCACGTTTCTGCTGCCCATGCAGCTAAAGATGGTTCTCTGTGTTTGGTTGAGGAAAATGGAGCTGATGATGGCAAAGAGGATGAGGCAGCTATTGATTCTCATCAGATTTCAATTGCAATTTCTGTTAGGGATTCTGATTCTTTGGAGGCTCAGCGAGTTCATTGTCCTTCTGAAGGTGGTGTTGCCATAATTCATGAACACCAAGATGATCCAAGAAGTCCGTGCAAACAAGGAAATAGCCGAAGGAAAAGAAGAAAAGTATCAGATAATCCAGAAGTCACGCCAGAGACAGTTTTAAGGAGGAGTTCTCGTCGGGCATCAGCTAGAAAGCGGGTTTCAAGCACTGTACTAGTGGAGGTGACTGATGATCCTTTGTTGTCCTTGGAAACCAGTGCCTTAACAGAAGAAAAGCCTCTAATCCCTGGTTCTCAGAAATATGAGCAATGCAGTGATCCTCTTCCAAAGCTGCAATTGCCCCCGTCTTCTACAAATTTGAATTTAGATGGCGTTCCTGTTCTTGAACTTTTTTCTATTTATGCTTGTTTAAGATCATTCAGTACTTTATTATTTTTGAGTCCATTTGAGTTGGAGGATCTTGTAGCTGCCCTGAAGTCTGAAATCCCAAGTATATTATTTGACAGCATTCATGTTTCTATTTTGCAAACTCTGAGAAAGAATTTGGAATACCTTTCCAATGAGGGTTGCCAATCTGCATCCAATTGCCTTAGGAATCTTAACTGGGATTTTTTGGACCTGGTCACATGGCCTATTTTCATGGCTGAGTACTTTCTGATTCATGGCTCAGGATTTAAAACTGATTTTGATCTTAAACATCTAATGTTCAGAACTGATTACTACAAACAACCTGTAATTGTGAAAGTCGAGATTCTTCAGCATCTATGTAATGATATGATTGAATCAGAAGCCATAAGGTCAGAGCTTAACAGAAGATCTTTGGTAACTGAGTCTGATGTGGGTTTTGATCAGAATATGTATTTTGACACTGGCAAGAAAAGAAGAGCTGTAATGGATGTGTCTGGTGGCTCTTGCTTGACTGAGGAGAATGTGGATGACACAACTGACTGGAACAGTGATGAATGTTGCCTGTGCAAGATGGATGGTTGTTTAATATGCTGTGACGGTTGCCCTGCAGCATTCCACTCAAGATGTGTGGGAATTGCCAGTGGCCATCTCCCTGAAGGTGACTGGTATTGCCCCGAGTGTGGAATTGGCAAACACATAGCTTGGATGAAATCACGAAGGTCACTTCGAGGAGCAGACTTATTAGGGATGGATCTGGATGGCCGTCTCTATTTTAACAGCTGTGGTTACCTGTTAGTGTCAAACTCATCTGAAGCAGGGTCATTGTTCAATTACTACCACAGAAATGATCTACATGTAGTAATTGAAGCTCTAAAATCTATGGATCCTTTATATGAAGGCATACTAATGGCTATCTATAAGCATTGGGATATCAGTGCTAACTTGAGTGTGGGGGATAGTGTCTTTAGTCAAAGTTCCTGCAAGAACATGCAGATGAAGGGAGAATATTCTACTATGCATACATTTTTAGCACCTTTTACTTCAGAGACATGTTTGGACAAGAATCGGGCTAATGATCAAAGTAAGTTGGACGAAAATTCAACTATTGTTGGTTGTATGCATCTTGGCCAAGAGTATCCAAAAGCTGGGAACCGCCTAGACTCAACGACCACCATAGAAAGTCCTTGTGTTGCTTCTGATGGATCAGCTGATACCACACAGATTAGAACAGGTGTCGACAATGTTCAGATAAATGGGCTCAGTGATTCCCATAGATGTGATGAATCCTTGAATCAGCCAGGAATACCAGAAAGACACCATCCTGTTGGTGACTGTTCTAGGTTAGATGTGGGACGTAAAATAAACTTAAGATCTGTAGGTGCTAGTATTACCCCCTCCACGGACAATAAGGATACTTCAGAAGTACCTTCTGGAATTGACTACATAAACTATTACAGCTTTGCCCGAACAGCTTCATTTGTAGCACAGGAGTTGATGTGTAAATCACCTGAAAAGATGAATAAGATTTTTGCAATGTCTGAAGAAGAAATTATGTCAGACCAAGCAAAGGTCATTATGAAGAAATCTACTAACTTTTGTTGGCCAAGTATTCAGGACCTGAATGCAGCTGCCCACAAAGAAAAATGTGGGTGGTGCTTTACTTGCAAAGGTGAAAATGAAGACAGGGATTGCTTGTTTAATTCTGTGGTGAAGCCTATTTGGGAAGTGCCTAATAATACTTTAGTTGGGCTTCAACCCAGGAAGATCCAGAATGGACGTCTTAGAGATATCATATGTCTTATCTTCTCTCTTGAGGTTCGATTACGTGGGCTTTTGTTGGGTCCATGGTTGAATCTGCATCAAACTGATCTTTGGCATAAGGATCTTTTGAAGGCATCTGATTTTCTTCCTGTTAAACGATTATTGCTTCTTTTAGAATCCAATTTGCGGCTTCTTGCACTTTCAGCAGATTGGTTAAAGCATGTGGATTCTGTTGCTACAATGGGATCTGCTACTCATATTGTGGTCAGTTCATCACGCACATCTTCAAGGCATGGTATTGGAAGGAAAAGGGCCAGGAATACAGATATTGAAACAAGTTCATCTTCAAACACTGCTAGTGGTTTGGGGATGTACTGGTGGAGAGGTGGCAGACTCTCCCGAAAGTTGTTTAATTGTAAGGCTTTGCCTCACTCCCTGGTTACCAAGGCTGCTAGACAAGGTGGGTATAGAAAGATACCAGGCATTTTATATCCTGAGAATTCAGATTTTGCACGTAGAAGCAGATTTGTTGCCTGGCGAGCTGCTGTTGAGATGTCAACAAGTGCCGAGCAGCTTGCTTTACAGGTTAGAGAGCTTTATTCAAACATAAGGTGGCATGATATTGAGAACAACCATTCCCTATATGTGTTGGACAAGGAATCTAGAAAATCAGTGAGGCTGTTCAAAAAATCAATCATACGCAGGAAGTGCACTGAAGGGCAATCTGTGAAATACCTTATTGATTTTGGGAAGAGAAGGGCTATTCCAGATGTTGTTATTAAACAGGGTTCTTTGTTGGAACAATCCTCTAGTGAGAGAAAAAAATATTGGCTGGAGGAGACTTATGTTCCATTGCATCTTCTAAAGAATTTTGAGGAAAAAAGAATTGTCCGCAAGTCCACGGATAAGAAACTTGGAAAAATTCTTGAGATTGGTAGAGTAAACAAGAAAATTCCTCAACAAAAGGGATTTTCATATTTGTTTACCAGATTGGAAAGATCTGATTGCCATCAATGTGGGCACTGCAACAAAGATGTTGCAATGAGGGATGCTGTGAGGTGCCTTCATTGCAAAGGATATTTCCACAAGAGGCATGTCAGGAAATCAAGTGGCACAAGAACCACTGGAAGCTCTTATTCATGTCACAGATGTCAAGATGGGTTGCAAGCAAAGACTAATACTAATAAAAGGAAAGTTGACTCAAAACTGCAGAAGATTCAAGCAAAGAAACGTAAAATTGTGCCTTCAGTTTGTAAATCATTGAACCTCAAGGGCAATAAAAAGGCATCGAGTAAGAATAAGATTCGACAGGTGAGATCTCGAAACAGTAAGAATATCCCATCAAGTATACCTCTTCGCCGTTCTACTAGGAAGGCCAAATCGTTGTATATGCATAGTCAATTGAATGGGGGACATAAAAAAGGAAAGTCAAGTAAAAAGAATGTGGGGCGGAAAAAGGGAAAGCAAAGTCAAACCAAGAAGGTGACCCCTCAAAAGTCCAAGGAAGCTACTGATCAATATAAGAAGTTGCCAGTTACTACTGCACATAAGAAGAGAACAAGAACCTGCAACAGTTATTGGCTTAATGGTCTTCAGTTGTCTAGAAAGTCAAATGATGAACGAGTAATGCTGTTTAAAGAGAAAAAGTGTGTTGTCTCATCTGAAGATTTCTCTGGCTCTGTTGATTATCCTAAATGCTGCCTTTGTTGTGGAAATGAATGCACCTTGAATTATATTGCGTGTGAAATCTGTGGAGATTGGTTTCATGGCGATGCTTTTGGGCTCAATGTGGAGAACACCAGACAACTTATTGGATTTAAGTGCCATGTTTGTCTTGATAGAACTGCTCCAATCTGTCCCCATTTGAAGATTAATGCATTGTCTCGCACTGAAAGCAATGCTGCAATTGAGTGTGCGGAGGAGTTATCTAATCCTGTTTCTCTACAACCTTTAAGTGAGGTTTGA 5208 0.4147 MEFVGKTVRKEVKGVGFITGTVKSYDPSSGFFEIVYDDGDSEELESSQVASLLQFQPGSVKAKPRVGRKPKKRRRRVEQKPDAEASSGNVGDNLVEEGSAFRGDLDGNVSSASGGDLDLGCEGIDRTIDVDVGNGGNSIGNVNGSVKENGGGEEIGFEDGLNKSVSANGSCVKDGLDLNARLNLNEDFNLNDACSLPLDTEDGLNRRDCIDLNLDVSNEDDVGVNSGYLGRLGGEALQRECNFDLNVEVCEEGRETRCDDDGNGHSEVGDALFSRMGQLQNEEEVNVNNSSVEDDGVNGNLNHVSDAVKLEGVHVSAAHAAKDGSLCLVEENGADDGKEDEAAIDSHQISIAISVRDSDSLEAQRVHCPSEGGVAIIHEHQDDPRSPCKQGNSRRKRRKVSDNPEVTPETVLRRSSRRASARKRVSSTVLVEVTDDPLLSLETSALTEEKPLIPGSQKYEQCSDPLPKLQLPPSSTNLNLDGVPVLELFSIYACLRSFSTLLFLSPFELEDLVAALKSEIPSILFDSIHVSILQTLRKNLEYLSNEGCQSASNCLRNLNWDFLDLVTWPIFMAEYFLIHGSGFKTDFDLKHLMFRTDYYKQPVIVKVEILQHLCNDMIESEAIRSELNRRSLVTESDVGFDQNMYFDTGKKRRAVMDVSGGSCLTEENVDDTTDWNSDECCLCKMDGCLICCDGCPAAFHSRCVGIASGHLPEGDWYCPECGIGKHIAWMKSRRSLRGADLLGMDLDGRLYFNSCGYLLVSNSSEAGSLFNYYHRNDLHVVIEALKSMDPLYEGILMAIYKHWDISANLSVGDSVFSQSSCKNMQMKGEYSTMHTFLAPFTSETCLDKNRANDQSKLDENSTIVGCMHLGQEYPKAGNRLDSTTTIESPCVASDGSADTTQIRTGVDNVQINGLSDSHRCDESLNQPGIPERHHPVGDCSRLDVGRKINLRSVGASITPSTDNKDTSEVPSGIDYINYYSFARTASFVAQELMCKSPEKMNKIFAMSEEEIMSDQAKVIMKKSTNFCWPSIQDLNAAAHKEKCGWCFTCKGENEDRDCLFNSVVKPIWEVPNNTLVGLQPRKIQNGRLRDIICLIFSLEVRLRGLLLGPWLNLHQTDLWHKDLLKASDFLPVKRLLLLLESNLRLLALSADWLKHVDSVATMGSATHIVVSSSRTSSRHGIGRKRARNTDIETSSSSNTASGLGMYWWRGGRLSRKLFNCKALPHSLVTKAARQGGYRKIPGILYPENSDFARRSRFVAWRAAVEMSTSAEQLALQVRELYSNIRWHDIENNHSLYVLDKESRKSVRLFKKSIIRRKCTEGQSVKYLIDFGKRRAIPDVVIKQGSLLEQSSSERKKYWLEETYVPLHLLKNFEEKRIVRKSTDKKLGKILEIGRVNKKIPQQKGFSYLFTRLERSDCHQCGHCNKDVAMRDAVRCLHCKGYFHKRHVRKSSGTRTTGSSYSCHRCQDGLQAKTNTNKRKVDSKLQKIQAKKRKIVPSVCKSLNLKGNKKASSKNKIRQVRSRNSKNIPSSIPLRRSTRKAKSLYMHSQLNGGHKKGKSSKKNVGRKKGKQSQTKKVTPQKSKEATDQYKKLPVTTAHKKRTRTCNSYWLNGLQLSRKSNDERVMLFKEKKCVVSSEDFSGSVDYPKCCLCCGNECTLNYIACEICGDWFHGDAFGLNVENTRQLIGFKCHVCLDRTAPICPHLKINALSRTESNAAIECAEELSNPVSLQPLSEV 1735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g00880 1735 SMART PHD_3 1419 1466 IPR001965 -
Gma11g00880 1735 SMART PHD_3 1647 1693 IPR001965 -
Gma11g00880 1735 SMART PHD_3 679 722 IPR001965 -
Gma11g00880 1735 Pfam DDT domain 486 538 IPR018501 -
Gma11g00880 1735 SUPERFAMILY FYVE/PHD zinc finger 1643 1698 IPR011011 -
Gma11g00880 1735 MobiDBLite consensus disorder prediction 1521 1536 - -
Gma11g00880 1735 SUPERFAMILY FYVE/PHD zinc finger 664 721 IPR011011 -
Gma11g00880 1735 MobiDBLite consensus disorder prediction 375 419 - -
Gma11g00880 1735 ProSitePatterns Zinc finger PHD-type signature. 680 721 IPR019786 -
Gma11g00880 1735 ProSiteProfiles Zinc finger PHD-type profile. 677 724 IPR019787 -
Gma11g00880 1735 PANTHER PHD FINGER FAMILY PROTEIN 1 1710 - -
Gma11g00880 1735 MobiDBLite consensus disorder prediction 59 93 - -
Gma11g00880 1735 MobiDBLite consensus disorder prediction 1504 1590 - -
Gma11g00880 1735 MobiDBLite consensus disorder prediction 1553 1573 - -
Gma11g00880 1735 ProSiteProfiles DDT domain profile. 482 542 IPR018501 -
Gma11g00880 1735 SMART testlast3 482 542 IPR018501 -
Gma11g00880 1735 PANTHER PHD-FINGER AND DNA BINDING DOMAIN-CONTAINING PROTEIN 1 1710 - -
Gma11g00880 1735 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1640 1699 IPR013083 -
Gma11g00880 1735 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 665 737 IPR013083 -
Gma11g00880 1735 MobiDBLite consensus disorder prediction 376 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g00880 Gma-Chr11 7383380 7394958 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g00880 1 1704 PHD Transcription Factor Family AT5G12400 40.724 0.0 1105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Gma11g00880 DDT 6.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g00880 - - gmx:100800973 3393.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g00880 11 7383380 7394958 Gma11g00880 11 7383380 7394958 ECH
Gma12g00205 12 1601412 1613045 Gma11g00880 11 7383380 7394958 GST