Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g00860 ATGGAGATAGAGCTAGCCACTACCAATGAAAAGGGTGTTACCGACTATGGTGATACTGTTTCAGAAAATAATAATAATACTAATAATAATAGGAGAGGGATGTATCTCGTGTGGGAAGATTTAACTGTTGTAGTTCCAAATTTTGGGAATGGACACACAAGAAGATTGCTTGATGGGTTGAGTGGATATGCTGAACCTAACAGAATCATGGCTATCATGGGTCCTTCTGGCTCTGGAAAATCTACTCTTCTTGATGCTTTAGCAGGTAGACTCTCTAGAAACGTTATCATGTCTGGAAATGTGCTTTTAAATGGAAAGAAGAGGAGATTAGACTATGGAGTTGTAGCTTATGTGACTCAAGAAGACATAATGTTGGGAACACTAACAGTGAGAGAGACAATATCTTACTCAGCTAATCTAAGGCTTCCATCAACCATGACCAAAGAAGAGGTTAATGATATCATAGAGGGAACAATTATGGAGATGGGTCTTCAAGACTGTGCTGATCGGCTAGTAGGGAATTGGCACTTGAGAGGCATAAGCGGTGGAGAAAAGAAAAGGCTAAGCATAGCACTTGAAATCCTCACAAGGCCAAGCCTCTTGTTCCTTGATGAACCCACCAGTGGTCTAGATAGTGCTTCAGCATATTTTGTTGCCCAAACTTTGAGAAATTTAGGTCATGATGGCAAGAGTACTGTTATCTCTTCTATACATCAACCAAGTAGTGAGGTTTTTGCACTCTTTGACGATCTCTTTCTTCTTTCTGGCGGTCAAACAATTTATTTTGGACCAGCCCAAAAGGCAGTTGAGTTCTTTGCCAAAGCAGGATTCCCATGTCCAAGTAGAAGAAACCCTTCAGATCATTTCCTCCGTTGTATTAATTCAGACTTTGACGCTGTCACGACGACTATGATGGCCTGCCAAAGAGTACATGAAGAAATGTCAATAACGGGATCGTTATCAACTGCAGCAATCAAAGCAACACTCATAGAGAAATACCGATGGTCAGAGCACGCAACCACTGCAAGAGCAAGAATCAAAGAAATATCAACCACTGAAGGACATGGATTTGAAAGTAAAAGCAAATGCGAAGCAAAATGGTGGAAGCAACTATCAACGCTGACTCGTAGATCTGTCGTGAACATGTCTAGAGATGTGGGATACTACTGGATAAGGATAACTATCTATGTTGCCTTATCTCTCTCTGTTGGAACAATCTTTTATGGAGTTGGATCGAGTTATAGAGCCATTTTTGCAAGAGGAGCATGTGGCGCTTTTATATCTGGTTTCATGACATTCATGTCCATTGGGGGCTTCCCTTCTTTCATAGAAGAAATGAAGGTTTTCTACAAAGAAAGACTCAACGGGTATTATGGCGTTGGAGTCTACATTCTATCAAATTTTCTCTCTTCATTTCCCTTTGTGGCAGTGATGTCCATTGCTACGGGGACAATAACCTATTATATGGTTAAGTTTCGTACAGAATTTTCACATTATGTGTATATCTGTCTGGATCTTATTGGCTGTATTGCGGTTGTGGAGAGCTCCATGATGATTATAGCTTCACTGGTTCCCAACTTCCTCATGGGATTGATAATTGGAGCGGGATATATTGGTGTTATGATGATGACCGCAGGCTATTTCCGTCAGATCCCAGATCTTCCTAAGATCTTCTGGCGTTACCCAATATCATACATCAATTATGGCGCATGGGGATTGCAGggagctttcaagaatgacatgatTGGAATGGAGTTTGATTCCTTAGAACCTGGGGGCCCAAAACTGAAAGGAGAAATCATCCTCAAAACCATGCTTGGCATTCGAGTTGATATTTCAAAATGGTGGGACTTAGTTGCAGTCATGATCATCCTCGTATTGCTTAGAGTTCTTTTCTTTTTCATTCTCAAATTCAAGGAAAGAGCTGCACCTTTTCTTTATAGTATCTACGCCAGGCAAACTCTGCAACGTATCAAGAAGCGACCTTCTTTCAGGAAAGGACCATCTTTCCCTTCCAAGCGTCACCAATCACTGCATCCCTTGTCTTCTCAAGAGGGTCTCAACTCCCCTATTCATTAG 2079 0.4084 MEIELATTNEKGVTDYGDTVSENNNNTNNNRRGMYLVWEDLTVVVPNFGNGHTRRLLDGLSGYAEPNRIMAIMGPSGSGKSTLLDALAGRLSRNVIMSGNVLLNGKKRRLDYGVVAYVTQEDIMLGTLTVRETISYSANLRLPSTMTKEEVNDIIEGTIMEMGLQDCADRLVGNWHLRGISGGEKKRLSIALEILTRPSLLFLDEPTSGLDSASAYFVAQTLRNLGHDGKSTVISSIHQPSSEVFALFDDLFLLSGGQTIYFGPAQKAVEFFAKAGFPCPSRRNPSDHFLRCINSDFDAVTTTMMACQRVHEEMSITGSLSTAAIKATLIEKYRWSEHATTARARIKEISTTEGHGFESKSKCEAKWWKQLSTLTRRSVVNMSRDVGYYWIRITIYVALSLSVGTIFYGVGSSYRAIFARGACGAFISGFMTFMSIGGFPSFIEEMKVFYKERLNGYYGVGVYILSNFLSSFPFVAVMSIATGTITYYMVKFRTEFSHYVYICLDLIGCIAVVESSMMIIASLVPNFLMGLIIGAGYIGVMMMTAGYFRQIPDLPKIFWRYPISYINYGAWGLQGAFKNDMIGMEFDSLEPGGPKLKGEIILKTMLGIRVDISKWWDLVAVMIILVLLRVLFFFILKFKERAAPFLYSIYARQTLQRIKKRPSFRKGPSFPSKRHQSLHPLSSQEGLNSPIH 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g00860 692 Pfam ABC transporter 57 208 IPR003439 GO:0005524
Gma11g00860 692 SMART AAA_5 66 257 IPR003593 -
Gma11g00860 692 PANTHER ABC TRANSPORTER G FAMILY MEMBER 13 31 687 - -
Gma11g00860 692 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 274 IPR027417 -
Gma11g00860 692 Gene3D - 21 276 IPR027417 -
Gma11g00860 692 CDD ABCG_EPDR 33 263 - -
Gma11g00860 692 ProSitePatterns ABC transporters family signature. 180 194 IPR017871 GO:0005524
Gma11g00860 692 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 31 687 - -
Gma11g00860 692 MobiDBLite consensus disorder prediction 675 692 - -
Gma11g00860 692 Pfam ABC-2 type transporter 238 312 IPR043926 GO:0140359
Gma11g00860 692 MobiDBLite consensus disorder prediction 661 692 - -
Gma11g00860 692 Pfam ABC-2 type transporter 370 578 IPR013525 GO:0016020|GO:0140359
Gma11g00860 692 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 36 281 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g00860 Gma-Chr11 7228964 7235590 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g00860 2 226 Acyl Lipid Metabolism Gene Families AT1G54350 31.298 6.69e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g00860 K05681 - gmx:100806806 1354.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g00860 11 7228964 7235590 Gma11g00860 11 7228964 7235590 ECH
Gma12g00189 12 1455222 1461825 Gma11g00860 11 7228964 7235590 GST