Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g00840 ATGGGAGGAGACGAAGAGGAGGAGGAGGTGCTCGGTTCGGGCCAATCCGCCTCCACCAACAACAGCTTGCCACCTCCCGTCGATAAAACTATTCTCAAATTGAACCATCTCGACGTACATGCTGATGATGCTGGATCACACGCTTCTCTTGCCAGTGGCAAGAAGAAAAAGAGAGGCGGTCAACGGGCTGTTGGACCTGATAAGAGTGGAAGAGGTCTCCGCCAATTTAGTATGAAAGTGTGTGAGAAGGTAGAAAGCAGGGGAAGAACCACATACAATGAGGTGGCGGATGAGCTTGTTGCTGAATTTTCTGAACCAAGCAATAGTGAATTGCCCCCTGATCAGCAACAATATGATGAAAAAAACATCCGCCGAAGGGTCTATGATGCTCTGAACGTTCTCATGGCAATGGATATTATTTCCAAGGACAAAAAGGAAATTCAATGGAGGGGCCTTCCTCGTACTACTGTGAATGATATTGAAGAACTAAAGACAGAGCGGCTTGGGCTCAGGAATAGAATTGAAAAGAAAACAGCCTATCTGCAGGAGCTTGAGGAGCAATTCATAGGTCTTCAGAACCTTATTCAACGAAACGAGCAGTTATATAGCTCAGGAAATCCTCCCAGTGGAGGTGTATCTTTACCTTTTATTTTGGTACAGACACGCCCTCATGCAACTGTGGAAGTGGAAATATCAGAAGATATGCAGCTTGTTCATTTTGATTTCAATAGCACTCCTTTTGAGCTGCATGACGACAATTATGTTCTCAAGGCAATGAAATTTGGTGAGAGACCACAAGATGATAATATGACACACAATCTTACTGACGGAGGTGAAGTTTCTAGCATGTCAGGCTTGTGTCAGCCACAGACTCCTACAAATCTTAATGTGTCAAATAGACCTCCAACATCACCTCCTCTCCCTGGCATACTAAAGAGAAATTTGCTGCAGTTGATAGACCGTCATAATAGTTATTCATCAGTACAGCCAAGTCATTCTCTAGGTTAG 1008 0.4425 MGGDEEEEEVLGSGQSASTNNSLPPPVDKTILKLNHLDVHADDAGSHASLASGKKKKRGGQRAVGPDKSGRGLRQFSMKVCEKVESRGRTTYNEVADELVAEFSEPSNSELPPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWRGLPRTTVNDIEELKTERLGLRNRIEKKTAYLQELEEQFIGLQNLIQRNEQLYSSGNPPSGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFGERPQDDNMTHNLTDGGEVSSMSGLCQPQTPTNLNVSNRPPTSPPLPGILKRNLLQLIDRHNSYSSVQPSHSLG 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g00840 335 Pfam E2F/DP family winged-helix DNA-binding domain 71 151 IPR003316 GO:0005667|GO:0006355
Gma11g00840 335 Gene3D - 65 156 IPR036388 -
Gma11g00840 335 MobiDBLite consensus disorder prediction 271 298 - -
Gma11g00840 335 MobiDBLite consensus disorder prediction 265 310 - -
Gma11g00840 335 SUPERFAMILY "Winged helix" DNA-binding domain 71 152 IPR036390 -
Gma11g00840 335 MobiDBLite consensus disorder prediction 12 26 - -
Gma11g00840 335 SUPERFAMILY E2F-DP heterodimerization region 158 272 IPR037241 -
Gma11g00840 335 Pfam Transcription factor DP 159 272 IPR014889 -
Gma11g00840 335 MobiDBLite consensus disorder prediction 43 72 - -
Gma11g00840 335 SMART E2F_TDP_2 68 151 IPR003316 GO:0005667|GO:0006355
Gma11g00840 335 CDD DP_DD 156 259 IPR014889 -
Gma11g00840 335 PANTHER TRANSCRIPTION FACTOR DP 24 313 - -
Gma11g00840 335 PANTHER TRANSCRIPTION FACTOR DP 24 313 IPR015648 GO:0005667|GO:0051726
Gma11g00840 335 Coils Coil 167 201 - -
Gma11g00840 335 PIRSF Txn_factor_DP 5 317 IPR015648 GO:0005667|GO:0051726
Gma11g00840 335 SMART DP_2 158 317 IPR014889 -
Gma11g00840 335 MobiDBLite consensus disorder prediction 1 29 - -
Gma11g00840 335 Gene3D Transcription factor DP 157 281 IPR038168 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g00840 Gma-Chr11 7061003 7064456 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g00840 57 269 E2F-DP Transcription Factor Family AT5G02470 52.804 5.66e-78 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Gma11g00840 DP 1.8e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g00840 K04683 - gmx:100800599 629.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00168 12 1269197 1272632 Gma11g00840 11 7061003 7064456 GST