Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g00809 ATGAGTGATGCAAAAGAAAACGAGGAAGCTGGCCAGGGGGTGCCCTCGGTCGTGGAAGAAAACCAGCAGTTGGTTGATGCAGAGGTTCAAGATCAACCTGAAGCTGCCTCTGCTCCTGTTCCAGTAGAGGAAACTTCGAATCATGTTGAAATTGGGTCAGATCATGTTGAAAATACGAAGGAAGAGCCACCTGCTGAGGATAAAAATGTAGAATTAGAGGTTGTTTCAGAGGGAATTCCACAAGATGTTCAAAATACTCTTCTCTCTGTCCCAGTAGAGGCTGATGCTCAAATTTTGGATAGGACTGAGTCTGAAGAAGCTGAAGCTTCTGGTGCGAAGGTGGAGGCTGATGAATTACCACAGAATAATAAGGAGGCTGAGAATAATGATGATATTCATCAAAAAAGTAATGGCGATGTTGAGATGGCTGTGGAGGTTAAGCCTGAAGACTGTGGAATGGCTGATAGTAAAGCATGTGATAATGGTGACCCTGTGCTTGCAAGTCATAATGAGCCTGCTACGCCACAGCCTGCTCCTGCAGATACAAACACTGAAATTATGAATGTATTAGAAGTTGAGAATAAGGTTGATGAAAAGCAAGTGGCTGAACCTGCAGATAACGGGAATTCAAACTCAAAGCACATGCTTTTCTTGGATGCCGACCATTCCTATGATGGTAATGAGTCAGGAACAGAGGAAGAACAGTCAGCATTTATGAAGGAGCTTGAAAACTTCTTTAGGGAGAGGAGCATGGAATTCAAACCTCCCAAATTCTACGGAGAAGGACTAAATTGCCTTAAGCTGTGGAGAGCTGTAACGAGATTGGGCGGCTATGACAAGGTGACTTCATGTAAATTATGGCGGCAAGTGGGAGAGTCTTTCAAACCTCCGAAGACATGCACCACTGTCTCATGGACTTTTCGGGGATTTTATGAGAAGGCACTTCTTGATTATGAAAGACATAAAATACAAGGTGGTGAGCTGAATGTGCCTGTTGCTTCTCATCCAGAGCCTATAAATATTGAAAATCAGGCCTCAGCATCAGGTAGAGCCCGGAGAGATGCTGCAGCACGGGCTATGCAGGGTTGGCACTCACAACGTCTCCTAGGCAATGGTGAAGTTAGTGACCCTATTATTAAGGATAGGAATTCTGTGTCTGTGCAAAAGCGTGAAAAGCAGCTTAAAAGCATCAATATACACAAACGAAAGAAGCCATCTTCACCTTACATGGATAATGCAGTCAAAGCTGCACGCAGTAAACCATCTAAACCACAATTGGACACAACTGTGATTGATATTGGGCCTCCTGCTGATTGGGTAAAAGTGAATGTACAAAAAACTAAAGATTGTTTTGAGGTATATGCTTTAGTTCCTGGCCTACTGCGGGAAGAGGTCCGTGTACAGTCAGACCCTGCAGGACGCCTAGTCATAAGTGGGGAGCCTGAGCATCCCAACAATCCTTGGGGTGTGACACCTTTCAAAAAGGTTGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCTGCGGTGGTGACACTGCATGGGCAGTTGTTTGTTCGTGTCCCATTTGAACATGCAGAATAG 1587 0.4474 MSDAKENEEAGQGVPSVVEENQQLVDAEVQDQPEAASAPVPVEETSNHVEIGSDHVENTKEEPPAEDKNVELEVVSEGIPQDVQNTLLSVPVEADAQILDRTESEEAEASGAKVEADELPQNNKEAENNDDIHQKSNGDVEMAVEVKPEDCGMADSKACDNGDPVLASHNEPATPQPAPADTNTEIMNVLEVENKVDEKQVAEPADNGNSNSKHMLFLDADHSYDGNESGTEEEQSAFMKELENFFRERSMEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKIQGGELNVPVASHPEPINIENQASASGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDRNSVSVQKREKQLKSINIHKRKKPSSPYMDNAVKAARSKPSKPQLDTTVIDIGPPADWVKVNVQKTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPNNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEHAE 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g00809 528 Pfam ARID/BRIGHT DNA binding domain 235 319 IPR001606 GO:0003677
Gma11g00809 528 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 428 528 IPR002068 -
Gma11g00809 528 CDD ARID 234 319 - -
Gma11g00809 528 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 28 527 IPR045147 GO:0006357
Gma11g00809 528 SUPERFAMILY ARID-like 227 334 IPR036431 GO:0003677
Gma11g00809 528 SMART bright_3 233 324 IPR001606 GO:0003677
Gma11g00809 528 CDD ACD_sHsps-like 443 523 - -
Gma11g00809 528 SUPERFAMILY HSP20-like chaperones 437 524 IPR008978 -
Gma11g00809 528 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 6-LIKE 28 527 - -
Gma11g00809 528 MobiDBLite consensus disorder prediction 152 181 - -
Gma11g00809 528 MobiDBLite consensus disorder prediction 100 139 - -
Gma11g00809 528 SMART ARID_2 229 319 - -
Gma11g00809 528 Pfam Hsp20/alpha crystallin family 445 525 IPR002068 -
Gma11g00809 528 ProSiteProfiles ARID domain profile. 232 323 IPR001606 GO:0003677
Gma11g00809 528 Gene3D - 431 528 IPR008978 -
Gma11g00809 528 MobiDBLite consensus disorder prediction 48 71 - -
Gma11g00809 528 Gene3D - 232 330 IPR036431 GO:0003677
Gma11g00809 528 MobiDBLite consensus disorder prediction 1 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g00809 Gma-Chr11 6777442 6783720 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g00809 213 526 ARID Transcription Factor Family AT1G76510 63.009 3.54e-131 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Gma11g00809 HSP20 2.2e-05 CL0190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g00809 - - gmx:100791081 1056.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g00809 11 6777442 6783720 Gma11g00809 11 6777442 6783720 ECH
Gma01g01600 01 51641642 51646998 Gma11g00809 11 6777442 6783720 GST