Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g00801 ATGACGCGCGCGTTCAGAATTCTAAACTCCGCGGACAACGCCACCGCGGTAGccgcggcggcgcctccgccggaggcggtagcgctggagtccgacttcgtggtgattctcgcggcgctcctctgcgcgctcatctgcgtggtggggctggtggcggtggcgcggtgcgcgtggctccggcgaggctcgggtgccggaaactctcctcggcaagccttggcgaacaagggcctgaagaagaaggtgctgcagtcgcttccgaagttcgcgtacgtggacagcaacccgagcaagtggttagcgacgtcggaatgcgcgatctgcctcgccgagttcgccgccggcgacgagatccgcgtgctgccgcagtgcggccacggcttccacgtgccctgcatcgacacgtggcttgggtcccactcctcttgcccttcttgtcgacaggttttggcggtggccaggtgtcagaagtgtgggcgatttccggccaccggtgccggagcttccagaacgccggcgacCGAACCCGAATTGAAGTCCAGAGAAGACAACAATGCCGCGAGTTACAGCAATAATAATATTAATAACAACAGCGACAGGGGTGGCAGTAACAGTAATAGTAATTGTAACATGGAACATCATCATCACAGCCACCATGTGAATAGTGGGTTCTTGCCCTGA 681 0.1454 MTRAFRILNSADNATAVAAAAPPPEAVALESDFVVILAALLCALICVVGLVAVARCAWLRRGSGAGNSPRQALANKGLKKKVLQSLPKFAYVDSNPSKWLATSECAICLAEFAAGDEIRVLPQCGHGFHVPCIDTWLGSHSSCPSCRQVLAVARCQKCGRFPATGAGASRTPATEPELKSREDNNAASYSNNNINNNSDRGGSNSNSNCNMEHHHHSHHVNSGFLP 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g00801 226 SMART FANCL_C_2 101 155 - -
Gma11g00801 226 ProSiteProfiles Zinc finger RING-type profile. 105 147 IPR001841 -
Gma11g00801 226 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 152 IPR013083 -
Gma11g00801 226 MobiDBLite consensus disorder prediction 183 210 - -
Gma11g00801 226 MobiDBLite consensus disorder prediction 165 226 - -
Gma11g00801 226 CDD RING-H2_PA-TM-RING 104 147 - -
Gma11g00801 226 SMART ring_2 105 146 IPR001841 -
Gma11g00801 226 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL44-RELATED 1 182 - -
Gma11g00801 226 Pfam Ring finger domain 104 147 IPR001841 -
Gma11g00801 226 SUPERFAMILY RING/U-box 83 152 - -
Gma11g00801 226 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g00801 Gma-Chr11 6693433 6694425 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g00801 5 183 C3H Transcription Factor Family AT1G76410 59.358 5.83e-64 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g00801 - - gmx:100787383 381.333
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01611 01 51790485 51791490 Gma11g00801 11 6693433 6694425 GST