Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g00780 ATGGGTCTTTGCTTTGCTTCCCTCGCTACCCACCAAACACCCTCCAATAATTCCCCTCACTATTCAGGTTCAGCGCGTGAGATGGGAATTACTGAAAGCACTAGTGTTAATGGAGGAAGCAGTAGCATTAATAGCAATAACATGGTGTTTCCGAGTGTGGAAACGCGGAACTTGAAGCAGTTCAATTTCGCGGATCTGAAAGCAGCAACCAAGAGTTTCAAGTCGGATGCATTGCTTGGTGAAGGAGGTTTTGGCAAAGTTTACAAAGGATGGTTGCATGAGAAGACACTGACACCCACCAAAGCTGGATCTGGAATGGTGGTTGCTGTTAAGAAGTTGAACTCAGAAAGTTTGCAGGGCTTTCGTGAGTGGCAGTCAGAAATCAATTTCTTAGGAAGGATTTCTCACCCAAACCTGGTCAAGCTATTGGGTTACTGTTGTGACGATATCGAATTTCTCcttgtgtacgagttcatgccaaagggaagcttggagaatcatctctttagaaGAAATACTAACAGTGAACCACTCTCTTGGGACACCCGAATCAAAATAGCTATTGGTGCTGCACGGGGCTTGGCTTTCTTACACACCTCAGAAAAGCAAATCATATACAGAGATTTCAAAGCCTCCAATATACTACTTGATGAGGATTATAATGCAAAAATTTCAGATTTTGGCTTGGCAAAATTAGGCCCTTCTGGGGAAGATTCACACGTGAGTACCAGGATCATGGGAACATATGGCTATGCTGCTCCAGAATACATTGCAACAGGTCACCTTTATGTAAAGAGTGATGTTTATGGTTTTGGTGTAGTGCTGCTTGAAATGCTGACAGGGTTAAGGGCACTTGACAAAAACCGCCCCATAGAGCAGCAGAATCTGATTGAATGGGCTAAGCCTTCTCTCTCTGATAAAAGAAAGTTGAAAAGCATCATGGATGAGAGGATAGAGGGTCAGTATTCAACCAAGGCAGCATTAAAATCAGCACATCTTATTCTAAAATGCCTTCAATGTGACCGTAAGAAACGTCCTCACATGAAAGATGTTCTTGACACATTGGAACACATCGAAGCTATCAAGGACAGAACGAAGTAA 1101 0.4105 MGLCFASLATHQTPSNNSPHYSGSAREMGITESTSVNGGSSSINSNNMVFPSVETRNLKQFNFADLKAATKSFKSDALLGEGGFGKVYKGWLHEKTLTPTKAGSGMVVAVKKLNSESLQGFREWQSEINFLGRISHPNLVKLLGYCCDDIEFLLVYEFMPKGSLENHLFRRNTNSEPLSWDTRIKIAIGAARGLAFLHTSEKQIIYRDFKASNILLDEDYNAKISDFGLAKLGPSGEDSHVSTRIMGTYGYAAPEYIATGHLYVKSDVYGFGVVLLEMLTGLRALDKNRPIEQQNLIEWAKPSLSDKRKLKSIMDERIEGQYSTKAALKSAHLILKCLQCDRKKRPHMKDVLDTLEHIEAIKDRTK 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g00780 366 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672|GO:0006468
Gma11g00780 366 SUPERFAMILY Protein kinase-like (PK-like) 47 357 IPR011009 -
Gma11g00780 366 ProSitePatterns Protein kinases ATP-binding region signature. 79 112 IPR017441 GO:0005524
Gma11g00780 366 ProSiteProfiles Protein kinase domain profile. 73 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma11g00780 366 PANTHER OS01G0588500 PROTEIN-RELATED 17 364 - -
Gma11g00780 366 Pfam Protein tyrosine and serine/threonine kinase 76 355 IPR001245 GO:0004672|GO:0006468
Gma11g00780 366 PANTHER SERINE/THREONINE-KINASE CX32, RELATED PROTEIN 17 364 - -
Gma11g00780 366 Gene3D Phosphorylase Kinase; domain 1 35 158 - -
Gma11g00780 366 Gene3D Transferase(Phosphotransferase) domain 1 159 366 - -
Gma11g00780 366 CDD STKc_IRAK 79 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g00780 Gma-Chr11 6515596 6519740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g00780 59 355 Glycoside Hydrolase AT3G07070 50.671 1.89e-102 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gma11g00780 PK_Tyr_Ser-Thr 2.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g00780 - - gmx:100777578 719.539
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g00780 11 6515596 6519740 Gma11g00780 11 6515596 6519740 ECH
Gma11g00780 11 6515596 6519740 Gma16g01100 16 27800319 27803696 PCT
Gma16g01100 16 27800319 27803696 Gma11g00780 11 6515596 6519740 PCT