Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g00774 ATGGGAGGTGATGACGCTGCCGCTGAGAGTGCCACCACAGAGCGGAACGCCGCAAACGAAGTCAACATCAACATCCGCTGTTCCAATGGTTCCAAGTTTTCCGTTCAGATTGGCCTCGATTCCACCGTCAGATCCTTCAAGGAGGCGGTTGCTCACAATTGTGATATATCCTCTGATCAACAGCGCCTGATTTACAAGGGTCGGATCCTCAAGGATGATCAACCCCTCCAAAGCTACGGTTTGGAGGCTGATCACACTGTCCATTTGGTTCGTGGTTTTTCTCCTTCTAACACCACTGGTGGGACTAATAGTGGTGGTGGCGGTGGTGGAAATACCACAACTGCCAACACGAGAGGTGCTGGTGCTAATGAGGGTGGGGGTTTAGGAGGGCCAGGATTTGGAGCTTCACCGTTTCCTGGACTTGGTGGTAACAACGGGATGGGGGGCGGTGGCCTCAATGGCTTATTTGGAGCGGGCTTTCCGGATCTTGAACAAATGCAGCAACCATTTTTGTCAAATCCCAATTTAATGAGAGATATAATGAACACACCTGCTATGCAGAATTTAATAAATAATCCAGACATAGTGCGGAATCTTATAATGAATAACCCGCAGATGCAAGAGCTAATGGATAGGAACCCTGAGCTGGCACACATACTTAATGATCCCAGCACTCTTCGTCAGACACTCGAAGCTACAAGGAACCCTGAGATCATGCGCGAAATGATGAGGAATACAGACAGAGCAATGAGCAACATTGAATCTTCTCCTGAGGGATTTAACATGCTGAGACGCATGTATGAAAATGTTCAAGAACCATTTTTGAATGCCACTACAATGGCTGGTAACACTGGAAATGATGCTGCAGCAGTCAGGAACCAATCCACTAATCCCTCAACTACTAATTCTGAAGCAACTTCCCCTGTACCCAATACGAACCCACTTCCTAATCCGTGGTCCTCAACTGGAACTGGAGGAGGAGGCCAAACTAACACCAGAAGGTCAACTACTACTGGTGGGGACGCCCGACAGCCGGCACCCACTGGCCTAGGAGGGCTTGGACTGCCAGATCTTGAAGGCATGATGGGTGGGATGCCAGATACTGCTATGTTGACCCAGTTAATGCAAAACCCAGCCATTTCACAAATGATGCAAAGTATCCTTTCCAATCCACAGACCATGAATCAGATTCTTGGGGTCAATAATGAGCAGCGTGGCATGCCTGATTTAAATTCTCTAAGGGAGGTGATGCAAAACCCAGAGTTTCTACGCCTGTTTTCCTCACCTGAGACACTGCAGCAACTCTTGTCTTTCCAGCAAACACTTCTGTCTCAGCTTGGTCAGCAACAATCAGCACAGGAACCAGGTCAAACAGGTGGAGGCACTGGACCATTGAACAACATGGGGCTGGAGATGTTATCAAGCATGTTTGGTGGACTTGGAGCTGGTAGCCTGGCTGTTCCTAACAGATCAAATGAGCCACCGGAGCAATTGTATGCCACCCAACTTTCTCAGCTTCAAGAGATGGGGTTCTTTGACACGCAAGAGAACATAAGGGCTCTTATTGCTACATCAGGGAACGTACATGCAGCAGTTGAGCGGCTTTTGGGGAACCCCGGACAGTAG 1626 0.4871 MGGDDAAAESATTERNAANEVNINIRCSNGSKFSVQIGLDSTVRSFKEAVAHNCDISSDQQRLIYKGRILKDDQPLQSYGLEADHTVHLVRGFSPSNTTGGTNSGGGGGGNTTTANTRGAGANEGGGLGGPGFGASPFPGLGGNNGMGGGGLNGLFGAGFPDLEQMQQPFLSNPNLMRDIMNTPAMQNLINNPDIVRNLIMNNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMAGNTGNDAAAVRNQSTNPSTTNSEATSPVPNTNPLPNPWSSTGTGGGGQTNTRRSTTTGGDARQPAPTGLGGLGLPDLEGMMGGMPDTAMLTQLMQNPAISQMMQSILSNPQTMNQILGVNNEQRGMPDLNSLREVMQNPEFLRLFSSPETLQQLLSFQQTLLSQLGQQQSAQEPGQTGGGTGPLNNMGLEMLSSMFGGLGAGSLAVPNRSNEPPEQLYATQLSQLQEMGFFDTQENIRALIATSGNVHAAVERLLGNPGQ 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g00774 541 Gene3D - 7 105 - -
Gma11g00774 541 SMART ubq_7 21 92 IPR000626 GO:0005515
Gma11g00774 541 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN DSK2A-RELATED 3 541 - -
Gma11g00774 541 MobiDBLite consensus disorder prediction 91 134 - -
Gma11g00774 541 Pfam Ubiquitin family 23 90 IPR000626 GO:0005515
Gma11g00774 541 MobiDBLite consensus disorder prediction 278 343 - -
Gma11g00774 541 Gene3D - 481 541 - -
Gma11g00774 541 SUPERFAMILY UBA-like 495 537 IPR009060 GO:0005515
Gma11g00774 541 SUPERFAMILY Ubiquitin-like 16 108 IPR029071 -
Gma11g00774 541 SMART uba_6 499 537 IPR015940 -
Gma11g00774 541 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 493 538 IPR015940 -
Gma11g00774 541 PANTHER UBIQUILIN 3 541 - -
Gma11g00774 541 SMART CBM 355 397 IPR006636 -
Gma11g00774 541 SMART CBM 203 242 IPR006636 -
Gma11g00774 541 SMART CBM 400 435 IPR006636 -
Gma11g00774 541 SMART CBM 149 190 IPR006636 -
Gma11g00774 541 MobiDBLite consensus disorder prediction 91 120 - -
Gma11g00774 541 MobiDBLite consensus disorder prediction 446 468 - -
Gma11g00774 541 Pfam UBA/TS-N domain 499 535 IPR015940 -
Gma11g00774 541 Gene3D - 198 256 - -
Gma11g00774 541 MobiDBLite consensus disorder prediction 446 464 - -
Gma11g00774 541 MobiDBLite consensus disorder prediction 278 357 - -
Gma11g00774 541 CDD UBA_PLICs 499 537 - -
Gma11g00774 541 ProSiteProfiles Ubiquitin domain profile. 21 90 IPR000626 GO:0005515
Gma11g00774 541 CDD Ubl_Dsk2p_like 21 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g00774 Gma-Chr11 6467128 6472259 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g00774 21 90 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 28.571 8.94e-06 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g00774 K04523 - gmx:100780421 886.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g00774 11 6467128 6472259 Gma11g00774 11 6467128 6472259 ECH
Gma01g01634 01 52048795 52054721 Gma11g00774 11 6467128 6472259 GST
Gma11g00774 11 6467128 6472259 Gma16g01107 16 27878994 27893676 PCT
Gma11g00774 11 6467128 6472259 Gma02g00380 02 3970822 3977430 PCT
Gma16g01107 16 27878994 27893676 Gma11g00774 11 6467128 6472259 PCT
Gma02g00380 02 3970822 3977430 Gma11g00774 11 6467128 6472259 PCT