Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g00733 ATGGATTTTGCGCTGAATCCGTGTCCTTTGCGATCTTCTACGTTCGTGAATTTCGTCGAGAGGGTTAAACAGCTTGGTACCCTCGCCTTTTCTGCAGTCATTGGGAACATCTTCTCCGCGATCTTGACCTTCTGCTTCGCATTAGTTGGCACTTTGTTGGGGGCTTTGACTGGAGCTTTGATAGGACAAGAAACTGAGAGTGGCTTCATTCGAGGGGCTGCTGTTGGTGCCATATCAGGAGCTGTTTTTTCCATTGAAGTGTTTGAATCCTCTCTTGTTCTCTGGCAATCTGATGAATCTGGGATTGGCTGTGTCTTATACTTGATTGATGTTATTGCCAGCTTACTGAGTGGGAGACTTGTGCGTGAGAGGATTGGTCCGGCCATGTTGAGTGCTGTTCAAAGTCAGATGGGTGCTGTTGAAGCCAGCTTTGATGAGGTTCAAAACATCTTCGACACCGGGGGTTCCAAAGGTTTGTCTGGAGATTTGGTTGAAAAAATCCCCAAAATAAAAATTACAACAGACAACAATTTTGATGCATCCGGTGATAGAGTCTCTTGTTCAGTTTGCCTGCAGGACTTTATGCTTGGAGAGACAGTAAGAAGCTTACCTCATTGCCATCACATGTTTCACCTACCTTGCATAGATAAGTGGCTCTTCAGACATGGTTCTTGCCCATTATGCAGAAGGGATCTGTAA 699 0.4535 MDFALNPCPLRSSTFVNFVERVKQLGTLAFSAVIGNIFSAILTFCFALVGTLLGALTGALIGQETESGFIRGAAVGAISGAVFSIEVFESSLVLWQSDESGIGCVLYLIDVIASLLSGRLVRERIGPAMLSAVQSQMGAVEASFDEVQNIFDTGGSKGLSGDLVEKIPKIKITTDNNFDASGDRVSCSVCLQDFMLGETVRSLPHCHHMFHLPCIDKWLFRHGSCPLCRRDL 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g00733 232 Pfam Ring finger domain 186 229 IPR001841 -
Gma11g00733 232 PANTHER RING/U-BOX SUPERFAMILY PROTEIN-RELATED 10 232 - -
Gma11g00733 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 232 IPR013083 -
Gma11g00733 232 ProSiteProfiles Zinc finger RING-type profile. 187 229 IPR001841 -
Gma11g00733 232 CDD RING-H2_PA-TM-RING 187 229 - -
Gma11g00733 232 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 10 232 IPR044523 -
Gma11g00733 232 SUPERFAMILY RING/U-box 186 232 - -
Gma11g00733 232 Pfam YMGG-like Gly-zipper 46 81 IPR027367 -
Gma11g00733 232 SMART ring_2 187 228 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g00733 Gma-Chr11 6141035 6143643 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g00733 16 232 C3H Transcription Factor Family AT5G66070 76.498 4.87e-118 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g00733 - - gmx:100306109 453.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g00733 11 6141035 6143643 Gma16g01146 16 28591616 28593718 PCT
Gma11g00733 11 6141035 6143643 Gma02g00403 02 4153458 4155682 PCT
Gma16g01146 16 28591616 28593718 Gma11g00733 11 6141035 6143643 PCT
Gma02g00403 02 4153458 4155682 Gma11g00733 11 6141035 6143643 PCT