Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g00691 ATGGGAAGGGTGATTCGCGCACAGCGTAAGGGTGCGGGGTCGGTGTTCAAGTCCCACACCCACCACCGCAAGGGTCCGGCGAGGTTCCGCAGCCTCGACTTCGGCGAGCGCAACGGCTACCTCAAAGGGGTCGTCACCGATATCATCCACGACCCTGGTCGCGGTGCTCCTCTAGCCAAGGTGGCGTTCCGCCACCCCTTCCGCTACAAGAAGCAGATGGAGCTCTTCGTCGCCGCCGAGGGCCTCTACACCGGCCAGTTCATCTACTGCGGCAAGAAGGCCACCCTCGTCGTCGGCAACGTCTTGCCCCTCCGATCCATCCCCGAAGGTGCCGTTATCTGCAACGTCGAGCACCACGTTGGCGACCGCGGCGTCTTCGCCAGAGCCTCCGGTGACTATGCCATTGTTATCAGCCACAACCCTGATAACGACACCTCTAGGATCAAGCTTCCTTCTGGGTCAAAGAAGATTGTGCCTAGTGGGTGCAGGGCGATGATTGGGCAGGTTGCAGGTGGAGGGAGGACTGAGAAGCCTCTTCTGAAAGCTGGTAATGCTTATCACAAATTCAGAGTGAAGAGGAATTGCTGGCCTAAGGTGCGTGGTGTGGCGATGAACCCAGTTGAGCATCCTCATGGAGGAGGTAATCACCAGCATATTGGTCATGCCAGTACCGTCAGGCGTGATGCTCCTCCTGGCCAGAAGGTTGGTCTCAtTGCTGCTAGGAGGACTGGTCGTCTTAGGGGGCAAGCTGCTGCTACTGCTGCTAAAGCGGATAAGACCACCTGA 786 0.584 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDIIHDPGRGAPLAKVAFRHPFRYKKQMELFVAAEGLYTGQFIYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVISHNPDNDTSRIKLPSGSKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARRTGRLRGQAAATAAKADKTT 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g00691 261 Gene3D - 1 86 IPR012340 -
Gma11g00691 261 SMART Ribosomal_L2_2 11 90 IPR002171 GO:0003735|GO:0005840|GO:0006412
Gma11g00691 261 Gene3D - 90 169 IPR014722 -
Gma11g00691 261 PANTHER RIBOSOMAL PROTEIN L2 1 258 IPR002171 GO:0003735|GO:0005840|GO:0006412
Gma11g00691 261 SMART Ribosomal_L2_C_2 96 231 IPR022669 GO:0003735|GO:0005840|GO:0006412
Gma11g00691 261 Hamap 50S ribosomal protein L2 [rplB]. 1 246 IPR023672 GO:0003723|GO:0003735|GO:0006412|GO:0015934
Gma11g00691 261 SUPERFAMILY Translation proteins SH3-like domain 99 246 IPR008991 -
Gma11g00691 261 SUPERFAMILY Nucleic acid-binding proteins 1 97 IPR012340 -
Gma11g00691 261 Pfam Ribosomal Proteins L2, C-terminal domain 98 225 IPR022669 GO:0003735|GO:0005840|GO:0006412
Gma11g00691 261 Gene3D Ribosomal protein L2, domain 3 170 247 IPR014726 -
Gma11g00691 261 MobiDBLite consensus disorder prediction 210 230 - -
Gma11g00691 261 Pfam Ribosomal Proteins L2, RNA binding domain 13 90 IPR022666 GO:0003735|GO:0005840|GO:0006412
Gma11g00691 261 PANTHER 60S RIBOSOMAL PROTEIN L8-1 1 258 - -
Gma11g00691 261 ProSitePatterns Ribosomal protein L2 signature. 197 208 IPR022671 GO:0003735|GO:0005840|GO:0006412
Gma11g00691 261 PIRSF RPL2p_RPL2a_RPL8e_RPL2o 1 255 IPR002171 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g00691 Gma-Chr11 5778410 5780033 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g00691 1 258 Cytoplasmic Ribosomal Protein Gene Family AT4G36130 94.961 0.0 508
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g00691 K02938 - gmx:100798311 495.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g00691 11 5778410 5780033 Gma11g00691 11 5778410 5780033 ECH
Gma11g00691 11 5778410 5780033 Gma16g01212 16 29833892 29835401 PCT
Gma11g00691 11 5778410 5780033 Gma02g00450 02 4532087 4533984 PCT
Gma16g01212 16 29833892 29835401 Gma11g00691 11 5778410 5780033 PCT
Gma02g00450 02 4532087 4533984 Gma11g00691 11 5778410 5780033 PCT