Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g00684 ATGCCTGGTTTCAGCGGCGATGAAACTGCTCCGTTCTTCGGCTTCCTGGGCGCGGCGGCCGCCCTAGTATTCTCCTGTATGGGAGCGGCGTACGGCACGGCCAAGAGCGGGGTCGGCGTTGCGTCGATGGGCGTCATGAGACCGGAGCTGGTCATGAAATCCATCGTCCCGGTTGTTATGGCCGGAGTGTTGGGAATCTACGGCTTGATCATCGCCGTCATCATCAGCACCGGTATTAACCCTAAGGCCAAATCCTATTACCTCTTCGACGGCTACGCTCACCTCTCCTCCGGCCTCGCTTGCGGCCTCGCTGGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGATGCCGGTGTTAGAGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCATCTTTGCTGAGGCGTTGGCATTGTATGGACTCATTGTTGGCATCATCCTCTCTTCACGTGCTGGCCAATCCAGAGCTGATTAG 495 0.5677 MPGFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g00684 164 CDD ATP-synt_Vo_c_ATP6C_rpt2 88 155 - -
Gma11g00684 164 TIGRFAM V_ATP_synt_C: V-type ATPase, C subunit 12 120 IPR011555 GO:0033179|GO:0046961|GO:1902600
Gma11g00684 164 CDD ATP-synt_Vo_c_ATP6C_rpt1 12 79 - -
Gma11g00684 164 SUPERFAMILY F1F0 ATP synthase subunit C 12 76 IPR035921 -
Gma11g00684 164 PRINTS Vacuolar ATP synthase 16kDa subunit signature 29 53 IPR000245 GO:0033179|GO:0046961|GO:1902600
Gma11g00684 164 PRINTS Vacuolar ATP synthase 16kDa subunit signature 55 79 IPR000245 GO:0033179|GO:0046961|GO:1902600
Gma11g00684 164 PRINTS Vacuolar ATP synthase 16kDa subunit signature 106 132 IPR000245 GO:0033179|GO:0046961|GO:1902600
Gma11g00684 164 PRINTS Vacuolar ATP synthase 16kDa subunit signature 133 156 IPR000245 GO:0033179|GO:0046961|GO:1902600
Gma11g00684 164 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 3 164 - -
Gma11g00684 164 SUPERFAMILY F1F0 ATP synthase subunit C 86 155 IPR035921 -
Gma11g00684 164 Gene3D - 10 161 IPR035921 -
Gma11g00684 164 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 3 164 - -
Gma11g00684 164 Pfam ATP synthase subunit C 16 75 IPR002379 GO:0015078|GO:0033177|GO:1902600
Gma11g00684 164 Pfam ATP synthase subunit C 96 154 IPR002379 GO:0015078|GO:0033177|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g00684 Gma-Chr11 5718153 5720374 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g00684 1 164 Primary Pumps ATPases(2) AT2G16510 98.171 2.75e-110 309
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g00684 K02155 - gmx:100796361 288.885
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g00684 11 5718153 5720374 Gma16g01218 16 29940662 29943436 PCT
Gma11g00684 11 5718153 5720374 Gma02g00457 02 4604566 4606566 PCT
Gma16g01218 16 29940662 29943436 Gma11g00684 11 5718153 5720374 PCT
Gma02g00457 02 4604566 4606566 Gma11g00684 11 5718153 5720374 PCT