Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g00677 ATGGAGCAGCCGCTTCAACCGCAGCCAGAGACTGCCGCGGGCGGTGCTAGGGATTCGGAGGGCTCGCGGTTGGTTGGAGTTCCCGTCGCGGTCGCTCGCGATGCTGACGTGGCGGAGAGAGAGGGGAACAGTTGCGCGCCGAATTTGCAGGTCACCGTCGTGGACGTCGGTGCCGTTTTGAAACGGAAGCGCGGCCGGCCGGCCAAGGGAGCTCCGAAAGTGGTGCCTCCGGTGAGGCAACAGCAGGACGAGGAGGATGTTTGTTTTATTTGCTTCGACGGTGGGAGCCTCGTTCTCTGTGATCGCCGGGGATGTCCAAAAGCGTATCATCCCGCGTGTATTAAGCGAGACGAAGAGTTTTTTCGATCAAAGGCCAAGTGGAATTGCGGTTGGCATATATGTAGCGTTTGTCAGAAGTCGTCACAATATATGTGCTATACTTGCACGTACTCTTTGTGTAAGGGATGCACAAAAGATGCTGATTTTGTTTGTATCAGAGATAATAAAGGTTTGTGCGGAATATGCATGAGGACTATAATGATGATTGAGAACAGTGCCCAGGGAAATAACGAAAAGTGTGAAGTGGATTTTGATGACAAAAGCAGCTGGGAGTATCTTTTCAAGGTGTATTGGATGTATTTGAAAGGAAAGCTATCTTTAACATTTGATGAGCTCCTTCGAGCTAAAAACCCATGGAAAGGTGCTGCTCCTATGAGTTATAAGATTCAAAGTCCCCATGAACTTTATCATCTTAGAGATGACAAAGGTTCTGGTTCAGAGAACTCCTGTATAGACATAGAATCAAATAATTTGAAGAACAAGAAGCCCAAGAGACAGCCAAAGCTTCTTGGTAAGGGTGATTGCTTGGATAGGATAACTTCAGGTGGTGACAGTGGTGTGTCTTTGCCTGAATGCACAAAATGGGCATCAAAGGAGCTTCTAGAGTTTGTTGCGCATATGAAAAATGGTGATACATCTCTCATGTCTCAATTTGATGTCCAGACTCTCTTGCTGGAGTATGCAAATAAAAATAATCTTCGTGATCCTCAACAGAAGTCCCAAATTGTTTGTGACTCTAGACTTTTAAATTTGTTTGGAAAAGCACGTGTTGGCCACATTGAAATGCTAAAGCTCCTTGAACCCCACTTTCTTTTAAAAGACAATGGCCCTGCAGAAAATACTTTTGGAGCAGGAATTATTAATGTTGTTGCTAATGAAGGGGAGGCCATTGACAATTACAATAAACAGTTGATGTTAGTTGATGACAAGAGATGTAAGACACATAATCCAGATGCATATGCTGCTATAGATGTGCACAACATTAAGTTGATCTACATGCAGAGAAGTCTGATGGAGAATCTAACTGAAGATGCTGAAAAGATTCATGAGAAGGTTGTTGGTTCATTTGTGCGGATAAGAATCTCTAGCAGTGATCAAAAACAAGATATGTATAGACTTGTCCAAGTTGTAGGTACAAGCAAGGTTGCTGAACCTTACAAAATTGGCACAAGAACAACAGATATTAAGCTTGAAATTTTAAACTTAAACAGGAAGGAGGCCATATCCATTTCTGAAATTTCTAATCAGGAGTTCTCTGAGGACGAATGCAAGCGGTTGCGTCAGAGTATAAAATATGGGCTCTCAAAGAGATTGACTGTGGGAGAGATTCTAAACAAAGCAGTGACACTTCAAGCAATTAGAGTTAATGATTTGCTGGAAGCTGAGATATTGCGGCTTAATCATCTTCGTGATAGAGCAAGTGAAAAGGGGCATAGAAAAGAACTTAAAGAATATGTGGAGAAGTTGCAGCTACTAAACTCTCCGGAGGAACGTCAACGCAGGCTGCATGAAATTCCAGATGTACACTCTGACCCCAATTTGGATTCAATGTTTGAGTCCGATGAAGATGATGGAGAGTCAGATGAAAGGAAGCAAGATAGCAACATATTTTCAAAATATCTTGGGTTTGATAGAAAAGAGAGGGGTTCTATTTTTCCAAGAATTTCGAATGGCATCTCCAACGACATGGGAAGCAAAACACAAGACTTGCCTGCTACCCAAGAACCGGTTGGGAATACATGCACATTGAAGAATAATATCAACTCTGATGATACAGCTATTGATGATAGCACTAATGCAGTTGTGAAATCAGAAGTGTCCAGTGTTGCAGTGGAAGTTTCATCATCGCTTCTGTCTACTGGGATGCAGCAGTCATTTAATGATTTTTTGAATGATAGATCATGGCATTATCAGGATCCAACTGGGAAGATTCAAGGACCTTTTTCTATGTTGCAGCTGTACAAGTGGAATGCAAGTGGATGTTTCCCTCCAGATCTCAGAATATGGAGGGTAGGTGAGAAACAAGATAACTCTATACTGTTAACCAATGCACTAAGTGAGAAGTGTTCCAAAAATGTGTCATTGCCATTCAACAGCCAATTGCTCTCTCTAGGGGTCAGTGTTACATTGGATGATAAAGGTAATAGTCAGGATGCTGGGAAGAATGCAAAGAATGAAATTTCTACAGATGGCCAAATTATTGAACAGACAAAGGAACAAAAGCCACAGGTGGATAATACCTCTACCCAGTCTGATGGCAAAGATGAACCGGTTAGGAGCAATGGATGTTCCAGCCAGCTGCCTGTATACCCTTTGCTACTGTCAACTGCCATTCCTGAGAAATTGAATGAGAATACTTCTGATAAATTAAGGAAAGGCCATGCAATTGTGGGAAATTCCGAAAATAGAAATAATGGCTCGAACAGGACATCTGATGTGCAGAGTAATAGTGGGCAGAGTTATCAGAAGCAATCAGACAGTGAAGAGAATTCAGGGCAatcttctggacagacctggagacaccctaatgtaaatagttcttccaattgcttggttaccacgtctgctcatgtttctagtacaaaaacatcaccacataagctgggatttgatttgcataatcctccttcccctccagcatgtaatacaacttctggactgacctggattcaccctaatgtaaatagttcttccaattgcttggttaacacatcaacccatgtttctgatacaaaaccatcaccacataagcttgggtttgatttgcaaaatcctccttcccctcctgcttgtaatacatcttctggacagacctggagacaccctgatataaatagttcttccaattgcttagttaccacatcaactcatgtttcttctacaaaaacatcaccgcataagctgggatttgatttgcataatcctccttcccctccagcatgtaatacatctACATGGCAGGCAATCATTGGTGAGCCCAATGATTTTGATGAATCAGTTTCAGATCTGTTGGCAGAAGTGGAAGCAATGGAGTCACTTGGTGGCTTGGAATCTCCCACTTCAATCATGAAATGTGGCGAGGATTTGACTGAAGGTTCTAAAAATGATTGTCTCAGTTTTGTTGCAGAGCTTAGCCCAATTCTTGATGCGGGTAAAGGTGATGCCCTGAGCTCCACTGGTGATTTAAACTTACCATCTCACCCGACAGCAGCTGAGGAACCATTACGACAAGCAGATGTGCATCACCATCATCATCAAAGAATTTCTGCGGAGGATTCTTCAAGAAGTTCTAAAGTTGAGGTGGGTACAAAGAACGGTGTTTCAGGTAATCAATGGGATTCAGGCTCAGAAAATTCACCCATTGTTCCATCCCCTGGAACATTGGGCCTGGCTATAGACACCACTTGGAGACTTGGCTTAGAGAATACACACTTGGGATGGAGTGGAATAGATCAAGGAAATGCAAATGTGGGTTGGGGAGTAGGACAGACTGCAGTGCAGGAAAACAGAAGTTCAAGTTCGTACACTTCTACAGTAACTCCAGGCCTTGGGGATAGCCAAACAAGATATGGCAGTGATCGATTTTCTGTGTCCAGAGATCGGGGTTTTCAAGGTCATGGTAGGGAATCAGGTTTTAGTAGAAGCAGAATTCCATATAACAGGCAACCGTCATATGGTGTTGGAAATGGAGGATCATATAGGCCTCTGCCCAAAGGGCAGCGAGTTTGTAAATTTTATGAAAGTGGGTACTGTAAGAAGGGAGCATCCTGTGATTACTGGCACCCATGA 4128 0.3835 MEQPLQPQPETAAGGARDSEGSRLVGVPVAVARDADVAEREGNSCAPNLQVTVVDVGAVLKRKRGRPAKGAPKVVPPVRQQQDEEDVCFICFDGGSLVLCDRRGCPKAYHPACIKRDEEFFRSKAKWNCGWHICSVCQKSSQYMCYTCTYSLCKGCTKDADFVCIRDNKGLCGICMRTIMMIENSAQGNNEKCEVDFDDKSSWEYLFKVYWMYLKGKLSLTFDELLRAKNPWKGAAPMSYKIQSPHELYHLRDDKGSGSENSCIDIESNNLKNKKPKRQPKLLGKGDCLDRITSGGDSGVSLPECTKWASKELLEFVAHMKNGDTSLMSQFDVQTLLLEYANKNNLRDPQQKSQIVCDSRLLNLFGKARVGHIEMLKLLEPHFLLKDNGPAENTFGAGIINVVANEGEAIDNYNKQLMLVDDKRCKTHNPDAYAAIDVHNIKLIYMQRSLMENLTEDAEKIHEKVVGSFVRIRISSSDQKQDMYRLVQVVGTSKVAEPYKIGTRTTDIKLEILNLNRKEAISISEISNQEFSEDECKRLRQSIKYGLSKRLTVGEILNKAVTLQAIRVNDLLEAEILRLNHLRDRASEKGHRKELKEYVEKLQLLNSPEERQRRLHEIPDVHSDPNLDSMFESDEDDGESDERKQDSNIFSKYLGFDRKERGSIFPRISNGISNDMGSKTQDLPATQEPVGNTCTLKNNINSDDTAIDDSTNAVVKSEVSSVAVEVSSSLLSTGMQQSFNDFLNDRSWHYQDPTGKIQGPFSMLQLYKWNASGCFPPDLRIWRVGEKQDNSILLTNALSEKCSKNVSLPFNSQLLSLGVSVTLDDKGNSQDAGKNAKNEISTDGQIIEQTKEQKPQVDNTSTQSDGKDEPVRSNGCSSQLPVYPLLLSTAIPEKLNENTSDKLRKGHAIVGNSENRNNGSNRTSDVQSNSGQSYQKQSDSEENSGQSSGQTWRHPNVNSSSNCLVTTSAHVSSTKTSPHKLGFDLHNPPSPPACNTTSGLTWIHPNVNSSSNCLVNTSTHVSDTKPSPHKLGFDLQNPPSPPACNTSSGQTWRHPDINSSSNCLVTTSTHVSSTKTSPHKLGFDLHNPPSPPACNTSTWQAIIGEPNDFDESVSDLLAEVEAMESLGGLESPTSIMKCGEDLTEGSKNDCLSFVAELSPILDAGKGDALSSTGDLNLPSHPTAAEEPLRQADVHHHHHQRISAEDSSRSSKVEVGTKNGVSGNQWDSGSENSPIVPSPGTLGLAIDTTWRLGLENTHLGWSGIDQGNANVGWGVGQTAVQENRSSSSYTSTVTPGLGDSQTRYGSDRFSVSRDRGFQGHGRESGFSRSRIPYNRQPSYGVGNGGSYRPLPKGQRVCKFYESGYCKKGASCDYWHP 1375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g00677 1375 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44 16 1375 - -
Gma11g00677 1375 SMART rtf1 435 545 IPR004343 GO:0003677
Gma11g00677 1375 Gene3D - 747 803 IPR035445 -
Gma11g00677 1375 MobiDBLite consensus disorder prediction 1191 1232 - -
Gma11g00677 1375 SUPERFAMILY GYF domain 742 798 IPR035445 -
Gma11g00677 1375 Pfam Plus-3 domain 440 543 IPR004343 GO:0003677
Gma11g00677 1375 ProSitePatterns Zinc finger PHD-type signature. 88 148 IPR019786 -
Gma11g00677 1375 Coils Coil 569 589 - -
Gma11g00677 1375 MobiDBLite consensus disorder prediction 1280 1345 - -
Gma11g00677 1375 ProSiteProfiles Zinc finger PHD-type profile. 85 151 IPR019787 -
Gma11g00677 1375 Pfam SWIB/MDM2 domain 310 383 IPR003121 -
Gma11g00677 1375 ProSiteProfiles SWIB/MDM2 domain profile. 302 385 IPR003121 -
Gma11g00677 1375 SUPERFAMILY CCCH zinc finger 1350 1374 IPR036855 GO:0046872
Gma11g00677 1375 MobiDBLite consensus disorder prediction 610 646 - -
Gma11g00677 1375 MobiDBLite consensus disorder prediction 1280 1306 - -
Gma11g00677 1375 Gene3D - 436 565 IPR036128 GO:0003677
Gma11g00677 1375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 175 IPR013083 -
Gma11g00677 1375 CDD GYF 745 798 IPR003169 GO:0005515
Gma11g00677 1375 SUPERFAMILY FYVE/PHD zinc finger 82 139 IPR011011 -
Gma11g00677 1375 SMART gyf_5 746 801 IPR003169 GO:0005515
Gma11g00677 1375 SMART swib_2 327 388 IPR019835 -
Gma11g00677 1375 Gene3D SWIB/MDM2 domain 301 390 IPR036885 -
Gma11g00677 1375 MobiDBLite consensus disorder prediction 1 25 - -
Gma11g00677 1375 CDD PHD5_NSD 87 132 - -
Gma11g00677 1375 MobiDBLite consensus disorder prediction 911 961 - -
Gma11g00677 1375 SUPERFAMILY SWIB/MDM2 domain 307 384 IPR036885 -
Gma11g00677 1375 ProSiteProfiles GYF domain profile. 745 799 IPR003169 GO:0005515
Gma11g00677 1375 SMART PHD_3 87 133 IPR001965 -
Gma11g00677 1375 MobiDBLite consensus disorder prediction 1212 1232 - -
Gma11g00677 1375 ProSiteProfiles Zinc finger C3H1-type profile. 1350 1375 IPR000571 GO:0046872
Gma11g00677 1375 MobiDBLite consensus disorder prediction 909 961 - -
Gma11g00677 1375 MobiDBLite consensus disorder prediction 827 878 - -
Gma11g00677 1375 MobiDBLite consensus disorder prediction 1191 1211 - -
Gma11g00677 1375 SUPERFAMILY Plus3-like 436 564 IPR036128 GO:0003677
Gma11g00677 1375 CDD SWIB-MDM2_like 308 383 - -
Gma11g00677 1375 MobiDBLite consensus disorder prediction 610 629 - -
Gma11g00677 1375 Pfam GYF domain 748 790 IPR003169 GO:0005515
Gma11g00677 1375 ProSiteProfiles Plus3 domain profile. 435 568 IPR004343 GO:0003677
Gma11g00677 1375 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 16 1375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g00677 Gma-Chr11 5649530 5656662 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g00677 85 165 PHD Transcription Factor Family AT4G14920 34.568 1.49e-06 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Gma11g00677 Plus-3 3.8e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g00677 - - gmx:100801151 2750.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g00677 11 5649530 5656662 Gma01g01726 01 52940562 52944720 ECH
Gma11g00677 11 5649530 5656662 Gma11g00677 11 5649530 5656662 ECH