LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma11g00671	ATGGGTCGAGGCAAGATTGAGATAAAGTTGATTGAGAACCCCACCAACAGGCAAGTCACTTACTCCAAGCGAAGGAATGGTATCTTCAAGAAAGCTCATGAACTCAGTGTTCTCTGTGATGCCAAGGTTTCACTTATCATGTTCTCTAAAAACAACAAGATGCATGAATACATTAGCCCTGGCCTCACGACAAAAAGGATCATTGATCAGTATCAGAAGACTTTGGGGGATATTGATCTGTGGCGTTCTCACTATGAGAAAATGCTTGAAAACTTGAAGAAGCTGATAGATATTAACAACAAGCTCAGAAGACAGATCAGGCATAGGATAGGTGAGGGTTTGGACATGGACGACATGAGCTTCCAGCAACTGCGCACTCTTGAAGAGGATTTGGTTTCTTCCATAGGGAAAATACGAGAACGAAAGTTCCACGTGATCAAAACACGGACTGATACCTGCAGGAAAAAGGTTAAAAGCCTGGAGCAGATGAATAGAGATCTGCTGTTTGAACTTAAGGAAAAGTGTGCGATCCATCCACAATTTATTTTGCACGATGAAGGAGACGAGGAATCAGCAGTTGCACTGGCCAACGGCGCCTCCACCCTGTATGCGTTCTGTCATCAGCACCATTCTCATCTGAACCTTCCCTCCCACCATTCTCACGGAGAAGAACCCTTTAAAACTGATGACCTTCGCCTTGCTTAA	705	0.4426	MGRGKIEIKLIENPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSKNNKMHEYISPGLTTKRIIDQYQKTLGDIDLWRSHYEKMLENLKKLIDINNKLRRQIRHRIGEGLDMDDMSFQQLRTLEEDLVSSIGKIRERKFHVIKTRTDTCRKKVKSLEQMNRDLLFELKEKCAIHPQFILHDEGDEESAVALANGASTLYAFCHQHHSHLNLPSHHSHGEEPFKTDDLRLA	234

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma11g00671	234	MobiDBLite	consensus disorder prediction	216	234	-	-
	Gma11g00671	234	Coils	Coil	85	105	-	-
	Gma11g00671	234	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	1	233	-	-
	Gma11g00671	234	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Gma11g00671	234	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Gma11g00671	234	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
	Gma11g00671	234	PANTHER	FLORAL HOMEOTIC PROTEIN DEFICIENS ISOFORM X1	1	233	-	-
	Gma11g00671	234	Gene3D	-	14	97	IPR036879	GO:0003677\|GO:0046983
	Gma11g00671	234	ProSiteProfiles	K-box domain profile.	85	177	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Gma11g00671	234	Pfam	K-box region	83	171	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Gma11g00671	234	ProSiteProfiles	MADS-box domain profile.	1	61	IPR002100	GO:0003677\|GO:0046983
	Gma11g00671	234	ProSitePatterns	MADS-box domain signature.	3	57	IPR002100	GO:0003677\|GO:0046983
	Gma11g00671	234	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	11	57	IPR002100	GO:0003677\|GO:0046983
	Gma11g00671	234	MobiDBLite	consensus disorder prediction	214	234	-	-
	Gma11g00671	234	CDD	MADS_MEF2_like	2	77	IPR033896	GO:0000977\|GO:0045944
	Gma11g00671	234	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983
	Gma11g00671	234	SUPERFAMILY	SRF-like	2	95	IPR036879	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma11g00671	Gma-Chr11	5585419	5588304	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma11g00671	1	229	MADS-box Gene Family	AT3G54340	49.351	5.28e-67	205

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Gma11g00671		K-box	1.3e-18	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma11g00671	K09264		-	gmx:100791963	454.136

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gma11g00671	11	5585419	5588304	Gma11g00671	11	5585419	5588304	ECH
	Gma11g00671	11	5585419	5588304	Gma01g01731	01	52999219	53001247	ECH