Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g00646 ATGGATCAGTCACCACCTTATTATAACCGATTTCCTCAGACTCCAAGCTCATCCAAGAAGGGAAGAAGTGGTTATGAACCATCAGACACAGAGACAGAGTGGCAAGAGATTCCACGGCACGAACGAGAAAGAAGAAACTTCACTTTAGAAGAAACAAAAGCATTTACACTAATGAACAAAAGCCCCATGGCACTACACAGGAGACACCCTTCAAGGTTTGAACATGAAGTCTCATCAGCTTCAACAGCTTCACGAAGAAGACACCATAGTAAATCACCCTATAAGCTGCGCGTAGCAGAAGAAGATGTTACTGTTGCTGCATCATCATCACCCATAACAGGTTTGAATACAAAGAGAAATATCAGTCCCTTGCCGAGACCTGACCTTGGAAGAACCGTGTCTCCTTTCAGGGAGCAAAGAATTGAGAAGCCACACTACAAGAGATCAGTGACAGCTCCAAGATTGAGGATTCAAGAGAGCAACAACGGAGGGAGAACCATTAATGAAATGGTTCATAAACAAAGAGAAGCTTCTCCTTTCGAAGCGCCTTCGGTTGGCATAATCAACGAGATGATAGCACAGGTGAAGCTATCTAAAGATCCCACTAGTGATTATTCATCAGTGCTCGAAAGCACTGATTCCATTCATCCGGGTGACCTTTTCTTTTCTCGCGAATGCAACGCCTTGCAAGCGAAGAATTCTTCGTTGCCAAGACGCATCCAGCAGTGTGAGTATTTCAGTCCAAGACCACCGGTGAACACCACCAGAATCCCATCTGAAAGCAAAGGAAATAATGGTGACATTAACATGAAAATGAATATCTTGTCTCGATCAAACACGGGTTTAAGTTCTGCGGCTACGAGTAGAAAGGGCAGTGACACTGGGAAGCCAAGTAGTGTAACAAGCGAAGCTAGTGGAAAGACAACTGCAAGCATGAAGAAATTCACAGCCAATAGAAAAAAGAATCAGAAAGATACATGGTTTTCTTGCATGAAAACAGGTAACTGTAGAACCACAAAAAAATCGCCCGAACGTCGACCTATTGATGAATCTTCTTTCATAGAGAAGGCAGTTGTAGTGGAAAGCCTCCCACAATTCTGGGCAGATAAACACCAACCTGCTTCACTTAATGGCTTCATTTGCAATAAACATGAAGCTCAACTTCTCAAGGAATTGGTGTCTCAGGGCTCTTGTCCTCATATTTTGCTTCTAGGACCCTCTGGCTCCGGGAAAAGAGAACTAGCAATGGCTATTCTTCGAGAAATATATGGGGATGCATGTTGTAACCTGTCTCATGATTTAAGACATTTTCCTATTCAGGACCAAAGGCTTAAGAAAGTATCTGTTCCAATAACATCCAGTTCTCATCACATGGAGCTAGATGTAAATTCAGAACCAAATGCTAAATATGCTTTAATGGGATTAATCAAAGAAATTAGCAATATATATGCGATTGCCCCTGAAGTCAGCAATATTAATTTCAAGTCAGATTTTAAAGTTATAGTTCTTTATGACGTCCACAAAGCAGTAGATAACATCCAGCACATTATCAAATGGATCATAGACCGCTATTCTGATATATGCAAATTAGTCCTCTGCTGTGAAGATGATGCAGACCTTATTGAACCTGTGAAAAACCGATTCAAAGTTATCCAAGTTGATGCTCCTCAGAATCACGAAattattgaggttcttattcagatagcaaagaatgaggaaattgatctatccgtgaattttgctgcaaaaattgctacaaaatctaagcagaacctcagaaaagcaatcatggctcttgaagcatgcaatgcacacaactatcctttttcagaagaacaaccaattccggttggatgggaggagattgtaatagaagttgctgcagagatcctagctgatccatcattttcacggcaagaaacttctctttctatcttatggaaatttcaaatgcttctgttggattttgtccacccgaaattgattctccagaaactcgtggaacatctcctaaaaagaattgaggccagcttaagaagggagctttactactggcatgcttattatgacagaagactcccaccaggaataacagctttactaaagttagaagAATTCGTGGCCAAGTTCATGAGCATGTGCAGAAAAAACTCTGGCAGTCGGAAATATGTGTAG 2175 0.3338 MDQSPPYYNRFPQTPSSSKKGRSGYEPSDTETEWQEIPRHERERRNFTLEETKAFTLMNKSPMALHRRHPSRFEHEVSSASTASRRRHHSKSPYKLRVAEEDVTVAASSSPITGLNTKRNISPLPRPDLGRTVSPFREQRIEKPHYKRSVTAPRLRIQESNNGGRTINEMVHKQREASPFEAPSVGIINEMIAQVKLSKDPTSDYSSVLESTDSIHPGDLFFSRECNALQAKNSSLPRRIQQCEYFSPRPPVNTTRIPSESKGNNGDINMKMNILSRSNTGLSSAATSRKGSDTGKPSSVTSEASGKTTASMKKFTANRKKNQKDTWFSCMKTGNCRTTKKSPERRPIDESSFIEKAVVVESLPQFWADKHQPASLNGFICNKHEAQLLKELVSQGSCPHILLLGPSGSGKRELAMAILREIYGDACCNLSHDLRHFPIQDQRLKKVSVPITSSSHHMELDVNSEPNAKYALMGLIKEISNIYAIAPEVSNINFKSDFKVIVLYDVHKAVDNIQHIIKWIIDRYSDICKLVLCCEDDADLIEPVKNRFKVIQVDAPQNHEIIEVLIQIAKNEEIDLSVNFAAKIATKSKQNLRKAIMALEACNAHNYPFSEEQPIPVGWEEIVIEVAAEILADPSFSRQETSLSILWKFQMLLLDFVHPKLILQKLVEHLLKRIEASLRRELYYWHAYYDRRLPPGITALLKLEEFVAKFMSMCRKNSGSRKYV 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g00646 724 SUPERFAMILY post-AAA+ oligomerization domain-like 618 713 IPR008921 GO:0003677|GO:0006260
Gma11g00646 724 MobiDBLite consensus disorder prediction 110 132 - -
Gma11g00646 724 Gene3D - 557 615 - -
Gma11g00646 724 MobiDBLite consensus disorder prediction 66 93 - -
Gma11g00646 724 MobiDBLite consensus disorder prediction 67 83 - -
Gma11g00646 724 MobiDBLite consensus disorder prediction 1 48 - -
Gma11g00646 724 MobiDBLite consensus disorder prediction 24 48 - -
Gma11g00646 724 PANTHER OS02G0704966 PROTEIN 175 723 - -
Gma11g00646 724 MobiDBLite consensus disorder prediction 1 23 - -
Gma11g00646 724 Gene3D - 618 714 - -
Gma11g00646 724 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 365 604 IPR027417 -
Gma11g00646 724 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 175 723 - -
Gma11g00646 724 CDD AAA 382 422 - -
Gma11g00646 724 Gene3D - 365 556 IPR027417 -
Gma11g00646 724 MobiDBLite consensus disorder prediction 246 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g00646 Gma-Chr11 5367124 5370843 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g00646 366 713 Core DNA Replication Machinery Family AT5G27740 36.467 1.31e-70 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g00646 K10756 - gmx:100795321 1420.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g00646 11 5367124 5370843 Gma11g00646 11 5367124 5370843 ECH