Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g00637 ATGTCGTTGAAAAGCATAGTAAGGGAGCTAAAGGAGATGAGGGATGGGATTGGTAGCATGTCAAGGCGAGGTGTCGAGAGCAGGCGTTGGAACGGTCGGACAAAGTCACATGTTGCTCCTGATGTCACTCTAACTTCACTTGAACCTATTCAGCAAGGGCATTGGGCGAATTTGCCGCCCGAATTGCTTCTGGACATAATAAGGAGGGTGGAAGACAGTGAGACTACCTGGCCAGCACGAGCCGTTGTGGTTTATTGTGGTTCAGTTTGTAAATCGTGGAGGGCCGTTACGAAAGAGATTGTTAAGACTCCTGAACAATGTGGAAGGCTCACATTTCCCATTTCATTGAAGCAGCCTGGTCCTCGTGATTCTCCAATACAGTGTTTTATCAGGAGGAACAGAGAAACTTCAACATATCTGTTGTACATTGGCCTGGTACCATCGGAGAACGAGACTGATAAGTTGTTATTAGCTGCAAAAAAGGTAAGAAGGGCAACAGGCACAGACTTCATCATATCTTTGGTTGCAGATGATTTTTCTCGCTCCAGCAACACATATGTTGGAAAACTCAGGTCTAATTTTTTGGGTACCAAGTTCACTATTTATGACAGCCAACCCCCACATGGAGCTGCAATTCAACCAGATAGTCAGCCTAGTAGGAGATTTCATTCAAAGCAGGTATCTCCTAGAGTTCCAGCATGTAACTATGTTGTTAGCACCATTGCCTATGAGTTGAATGTTCTCCGTGCAAGAGGGCCAAGGAGAATGCACTGCACCATGAACTCCATACCTGTCTCAGCTGTTCAAGCAGGGGGCAATGCTCCAACTCCTACTTTTCCTGAAATCATTGATGAGCCTTTTTCTCCCTCACCAGCACTGAAAGGAAAGGGTCCAATTAGAGATTTAGACAATGCAAGCCTCCCAGAGCTACTACCAGTAGAGAGCCAAGGCTCAGCTGAGCCTCTTGTACTTAAAAATAAGGCTCCTAGATGGCATGAGCAGCTGCAATGCTGGTGCCTAAACTTCAAGGGTCGTGTTACAGTGGCTTCTGTTAAAAACTTTCAACTTGTGTCTGCTGTTGATCCATCTCATAATGTTTCTGCTGCAGAGCAAGAAAAGGTAATCTTGCAGTTTGGAAAGATTGGAAAAGACATATTTACTATGGATTACCGTTATCCGCTCTCTGCCTTCCAAGCCTTTGCCATATGTTTgagcagctttgataccaaaccagcctgtgaatga 1245 0.4394 MSLKSIVRELKEMRDGIGSMSRRGVESRRWNGRTKSHVAPDVTLTSLEPIQQGHWANLPPELLLDIIRRVEDSETTWPARAVVVYCGSVCKSWRAVTKEIVKTPEQCGRLTFPISLKQPGPRDSPIQCFIRRNRETSTYLLYIGLVPSENETDKLLLAAKKVRRATGTDFIISLVADDFSRSSNTYVGKLRSNFLGTKFTIYDSQPPHGAAIQPDSQPSRRFHSKQVSPRVPACNYVVSTIAYELNVLRARGPRRMHCTMNSIPVSAVQAGGNAPTPTFPEIIDEPFSPSPALKGKGPIRDLDNASLPELLPVESQGSAEPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVSAVDPSHNVSAAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g00637 414 PANTHER TUBBY-RELATED 1 414 - -
Gma11g00637 414 ProSitePatterns Tub family signature 1. 342 355 IPR018066 -
Gma11g00637 414 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Gma11g00637 414 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Gma11g00637 414 PRINTS Tubby superfamily signature 235 262 IPR000007 -
Gma11g00637 414 PRINTS Tubby superfamily signature 324 341 IPR000007 -
Gma11g00637 414 PRINTS Tubby superfamily signature 342 358 IPR000007 -
Gma11g00637 414 PRINTS Tubby superfamily signature 371 390 IPR000007 -
Gma11g00637 414 PRINTS Tubby superfamily signature 392 414 IPR000007 -
Gma11g00637 414 SUPERFAMILY Tubby C-terminal domain-like 104 414 IPR025659 -
Gma11g00637 414 Pfam F-box domain 55 102 IPR001810 GO:0005515
Gma11g00637 414 Pfam Tub family 116 409 IPR000007 -
Gma11g00637 414 ProSitePatterns Tub family signature 2. 399 414 IPR018066 -
Gma11g00637 414 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 414 - -
Gma11g00637 414 SUPERFAMILY F-box domain 49 99 IPR036047 GO:0005515
Gma11g00637 414 Gene3D - 48 103 - -
Gma11g00637 414 Gene3D Tubby Protein; Chain A 113 414 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g00637 Gma-Chr11 5301339 5303063 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g00637 1 414 TUB Transcription Factor Family AT2G18280 65.217 0.0 534
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Gma11g00637 Tub 2.1e-107 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g00637 K19600 - gmx:100778290 838.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g00637 11 5301339 5303063 Gma11g00637 11 5301339 5303063 ECH
Gma11g00637 11 5301339 5303063 Gma01g01773 01 53356803 53359996 ECH
Gma01g01773 01 53356803 53359996 Gma11g00637 11 5301339 5303063 GST
Gma11g00637 11 5301339 5303063 Gma16g01264 16 31089966 31091907 PCT
Gma11g00637 11 5301339 5303063 Gma02g00502 02 5027171 5030680 PCT
Gma16g01264 16 31089966 31091907 Gma11g00637 11 5301339 5303063 PCT
Gma02g00502 02 5027171 5030680 Gma11g00637 11 5301339 5303063 PCT