Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g00636 ATGGTAACTGATATTGGTGAAGGGGAAGAGTTACAAAATCCCCGCTCCTTTAAGGTGCATAGTAAAATCTGCACAGAACTCACAGAATTAGTGGATAGAATCTCAAGAATAGTTCCAGACATAGAGGCGGCACGGCCAGGATACTCTTCAGGAATAGAGTCTCTATGTTTGCTGAACAATGCAATTGATAAAGTCAAACTACTTCTGCAACATTGCTCCGAATGTAGCAAATTCTACCTGGCTATGACAGGAGATACAGTACTCTCAAGATGCCTAAAGGCAACAAGATCATTAGAGAAAAGCTTAATCCAAATTCAAGATATGGTTCCTGTTATGTTGGCTGTAGAGGTTTCTAGAATAATTCATGATCTAGAATGTACAAGACTTGTTCTGGACCCTAATGAAGAAAAGGCTGGGAGGGTTGTGAGAGAGTTGCTTACTTTAACCTCAGATTCAGCTGATGATTCTGAAGTTAAAGCTCTTCAGTTTGCAGCATCTACACTGAATATAACATCCCCAAAGGCCATCTTAATAGAGCAACGATCTATTAAGAAGTTGTTAGATAAACTTGGACCCAATGACCTCCCAAAGAAGAAGATACTGAGATATCTTCTGTATCTACTGAAAAAGCATGGAAAGCTCATGGTGGGGGAACATGTGGAGGAGGTCTATTCTCGTTCTGAGGAACAAGCTGCAACAGAGAACTCGAATCACGATTCCCTACGAAGCCATCATGTTGATTCAGACACAATCTTGAAGTATGGTCAGTATAAAACTCACACCAATGAGTTAAGTGGAGTTGCACCACTTGAGGAATATAAGTGCCCAATATCCTCAAGGTTGATGTATGATCCTGTTATCATTGATTCAGGAGTAACATATGAAAGAATGTGGATAAAAAAGTGGTTTGATGAGGGTAATGACATATGTCCCAAAACCAGAAAGAAACTAGTCCATATGGGATTAACTCCAAACATGGCCATGAAAGACTTAATATCAAAGTGGTGCAGAAATAATGGAGTCTCCATTCCAGACCCTAGTAGGCATGCAGAAGATATTTGTGCATGGGAAGCTTCAAACACTTCCATTAGCAGCTTAGGAAGTTATTTCAATGATTTCACCGCACCAGTGGATCTTAGTAGCATGTCAATTGGGCCATTGGATACTAGTTTCAGTTTAGATGCCTCACATGGTAAGACCACTCGTGGCTCAAATTTGATGCAGACCAAGAGCCGTGACAATTCTCACAAACATCAGGCTCATACAGAGATACATGATACTGATTTGATGCTCTTGCCTCAACTCTGTGATCTTCAATGGGATTCTCAATGCAAGGTCATTCAAGATTTGAAAGATAATTTGAAAAGCAATAGCCAAGCTTTTGTTTCTGTATCAGCAGAGAATTTCATCGAACCACTCGTCAGGTTTCTGAGCAATGCATATGATCTGCGTGATATTAAAGCACTGAGAGCTGGAACTCAGCTTCTGTTGGAGTTTGTGAACAACTGCAGAAATGGTACGACTAATTTGAATGAAGATACTTTCATTATGTTGGCAAGTTTTCTCAATTCAGATGTGATTGGAGAAACTCTTGCCATAATGGAAGAACTGTCAGGATATGGGTTTAGTAAAGCTAAAATTGCAGCATCCAGTGCTCTCAGTTCTATTCTAAACATGCTTGATTCTGAAAACAAAGGTTTCCAACAGCAAGCTATTAGAATAATGTACAACTTGTCCTTCAGTGGTGAAGTTTGTCCCCGCATGCTATCTCTCAGGTGCATCCCAAAATTGCTGCCATTTTTTAAAGACAGAACCCTTTTGAGATACTGTATATATATATTGAAAAATCTTTGTGACACTGAAGAGGGTAGGAAATCTGTTTCTGAAACAAAGGGATGCTTATCTTCTGTTGCTGAAATACTTGATACAGGCAATAACGAGGAACAAGAACATGCGCTGGCTGTTCTAGTCTCTCTATGTTCTCAACATGTGGATTATTGTAAGTTGGTAATGCGTGAGGATGAGCATATCATAAGTCTTCTTATCTATATCTCACAGAATGGAAATGACAGAGGAAAAGGAAGTGCATTGGAATTGCTTCATCTTTTGAAAGATATTGACATTGCTGAGAATGAAGGTTGTCCTGAGCCAAATATCAACAACTCTTCTCGAGATTCTAACAGTTACCACCCTGAAGAAAATCAACCATCAAAGAAATCCACGTTTCTGAAGAAACTATCACCGTTCTCAAAGTCCAGTTCACATGCATCAAAAACCAAAAGATGA 2286 0.3941 MVTDIGEGEELQNPRSFKVHSKICTELTELVDRISRIVPDIEAARPGYSSGIESLCLLNNAIDKVKLLLQHCSECSKFYLAMTGDTVLSRCLKATRSLEKSLIQIQDMVPVMLAVEVSRIIHDLECTRLVLDPNEEKAGRVVRELLTLTSDSADDSEVKALQFAASTLNITSPKAILIEQRSIKKLLDKLGPNDLPKKKILRYLLYLLKKHGKLMVGEHVEEVYSRSEEQAATENSNHDSLRSHHVDSDTILKYGQYKTHTNELSGVAPLEEYKCPISSRLMYDPVIIDSGVTYERMWIKKWFDEGNDICPKTRKKLVHMGLTPNMAMKDLISKWCRNNGVSIPDPSRHAEDICAWEASNTSISSLGSYFNDFTAPVDLSSMSIGPLDTSFSLDASHGKTTRGSNLMQTKSRDNSHKHQAHTEIHDTDLMLLPQLCDLQWDSQCKVIQDLKDNLKSNSQAFVSVSAENFIEPLVRFLSNAYDLRDIKALRAGTQLLLEFVNNCRNGTTNLNEDTFIMLASFLNSDVIGETLAIMEELSGYGFSKAKIAASSALSSILNMLDSENKGFQQQAIRIMYNLSFSGEVCPRMLSLRCIPKLLPFFKDRTLLRYCIYILKNLCDTEEGRKSVSETKGCLSSVAEILDTGNNEEQEHALAVLVSLCSQHVDYCKLVMREDEHIISLLIYISQNGNDRGKGSALELLHLLKDIDIAENEGCPEPNINNSSRDSNSYHPEENQPSKKSTFLKKLSPFSKSSSHASKTKR 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g00636 761 SUPERFAMILY RING/U-box 263 346 - -
Gma11g00636 761 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 269 343 IPR013083 -
Gma11g00636 761 SMART Ubox_2 272 335 IPR003613 GO:0004842|GO:0016567
Gma11g00636 761 MobiDBLite consensus disorder prediction 713 761 - -
Gma11g00636 761 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 9 739 - -
Gma11g00636 761 PANTHER U BOX DOMAIN-CONTAINING 9 739 - -
Gma11g00636 761 ProSiteProfiles U-box domain profile. 268 342 IPR003613 GO:0004842|GO:0016567
Gma11g00636 761 Gene3D - 430 714 IPR011989 -
Gma11g00636 761 Pfam U-box domain 271 339 IPR003613 GO:0004842|GO:0016567
Gma11g00636 761 SUPERFAMILY ARM repeat 431 703 IPR016024 -
Gma11g00636 761 CDD RING-Ubox_PUB 273 315 IPR045210 -
Gma11g00636 761 MobiDBLite consensus disorder prediction 715 754 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g00636 Gma-Chr11 5294757 5300231 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g00636 14 707 U-box Gene Family AT4G36550 38.714 5.44e-150 453
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g00636 - - gmx:100791627 1436.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g00636 11 5294757 5300231 Gma11g00636 11 5294757 5300231 ECH
Gma11g00636 11 5294757 5300231 Gma01g01774 01 53362807 53368517 ECH
Gma01g01774 01 53362807 53368517 Gma11g00636 11 5294757 5300231 GST
Gma11g00636 11 5294757 5300231 Gma16g01266 16 31100803 31106363 PCT
Gma11g00636 11 5294757 5300231 Gma02g00504 02 5035327 5039402 PCT
Gma16g01266 16 31100803 31106363 Gma11g00636 11 5294757 5300231 PCT
Gma02g00504 02 5035327 5039402 Gma11g00636 11 5294757 5300231 PCT