Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g00631 ATGCATCGCTGTTGCAGTGGTTCCCAGGGGCACGTGATGGGACCCTGCACATGTGGTATGTTTCACAGCCAAACCACCAGCTCCTTCGCCATGTTCTTCTCCATGCCCAACCACAAACCACCACCCTACGATGATTCCGACAACATTTATGACTATTCTTCCTTCACTCCCTCTTCCTCTTCTTCCGTTGACTGCACCCTCTCCCTCGGTACCCCTTCCACCCGCTTCTCCGAAGACGAAGAAAAACGAAGCCGCCACGAACGCCGTTCCGTCTCTAACTTCTGCTGGGACTTACTACAATCCAAACACAACAACCCTCAATCCCATTCCAAGTCCTCCCGAACCACCAACACCACCGACCCTCTCCTCGCTCGCCGCTGCGCCAATTGTGATACCACTTCTACTCCTCTCTGGAGAAATGGCCCCCGTGGCCCCAAGTCACTGTGCAATGCGTGTGGGATTAGATTCAAGAAGGAGGAGAGAAGAGCGAGTGCGGCCGCCGCCACGCCGGCATCGGCGGCTTCCGGTGGCGTTATGGAATCGGCGCAGGTGTACAATAACTCGTGGTACGCACACCAGCAGAGTCAGAAGATGCAGTGCTTCTCGCCGGGGATGGGGAACGAGTTCCGTTTCGTGGATGACGCCGATAGAGACGCCGCCGATAACGGCATTCCGTTCCTCTCGTGGAGACTCAACGTCACGGACAGAACGAGCCTGGTTCACGACTTCACGAGATGA 738 0.5623 MHRCCSGSQGHVMGPCTCGMFHSQTTSSFAMFFSMPNHKPPPYDDSDNIYDYSSFTPSSSSSVDCTLSLGTPSTRFSEDEEKRSRHERRSVSNFCWDLLQSKHNNPQSHSKSSRTTNTTDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRASAAAATPASAASGGVMESAQVYNNSWYAHQQSQKMQCFSPGMGNEFRFVDDADRDAADNGIPFLSWRLNVTDRTSLVHDFTR 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g00631 245 Pfam GATA zinc finger 127 161 IPR000679 GO:0006355|GO:0043565
Gma11g00631 245 CDD ZnF_GATA 126 158 IPR000679 GO:0006355|GO:0043565
Gma11g00631 245 ProSiteProfiles GATA-type zinc finger domain profile. 121 157 IPR000679 GO:0006355|GO:0043565
Gma11g00631 245 SMART GATA_3 121 176 IPR000679 GO:0006355|GO:0043565
Gma11g00631 245 ProSitePatterns GATA-type zinc finger domain. 127 152 IPR000679 GO:0006355|GO:0043565
Gma11g00631 245 PANTHER GATA TRANSCRIPTION FACTOR 18 1 244 - -
Gma11g00631 245 Gene3D - 123 198 IPR013088 GO:0006355|GO:0008270
Gma11g00631 245 PANTHER GATA TRANSCRIPTION FACTOR 18 1 244 IPR044272 GO:0003700|GO:0009908
Gma11g00631 245 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 124 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g00631 Gma-Chr11 5242701 5243587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g00631 17 245 C2C2-Gata Transcription Factor Family AT3G50870 43.448 4.62e-62 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gma11g00631 GATA 5.9e-18 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g00631 - - gmx:100790571 461.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g00631 11 5242701 5243587 Gma11g00631 11 5242701 5243587 ECH
Gma11g00631 11 5242701 5243587 Gma16g01276 16 31258999 31260528 PCT
Gma11g00631 11 5242701 5243587 Gma02g00513 02 5123430 5124512 PCT