Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g00617 ATGTCTTCTCCTCATAACTCTTCTCCTGATGACTCTAGCCCTGATAATGCAACACCTGATAACTCCACCCCTGATGACTCTGACAACtcatcaccaccatcacaatcaccacctccgtcgtcgccaccaccgtcatcaccacctccatcgtcgccaccaccctcatcaccacctccatcgtcaccaccaccctcatcaccacctccatcatcgccaccacccctgtcgccaccaccatcatcttcatcatcaccaccaccctctccTTCCCCTCCAACATCAAACAGCCCAAGCCCTCCATCACCTAATGGGTCCTCACAGTCACCTTCTCCACCCGGATCATCACATTCTCCACCCTCCTTTGAATCACCGTCTCCTCCACACAAATCCTTAGACTCTCCACCGTCCTCAAGGAACTctggcagtggcagtggcagtagcaacggtggtggtaatgacagtggcggtgacggtagcagcaaggccatagttggagcagtgCTTGGCGTAGGAAGCGTGCTTCTTATTTTGGTCATTGTTTGCGTTGTTTGCAACAGGAAGAAGAAGAAGAAGAATACAAACACTTGGAATCATAATAACTATTACAATAGTGGGCAACATCCGAGTTATTACGGAGGTCCACATGGGGACCATGTTGTGAGGATGCAACAAAATGGAATGGGCCCTGGTGGCGGTGGTGGGTGGGGTGCACCACCCCCACCTCCGATGATGATGAATAGTGCTGACTTTAGCTCAAATTACTCGACAGGACCGCCCCCTTTGCCTCCTCCCTCACCAACCCTTGCTCTAGGCCTCAAAGGGGGCACCTTCTCTTATGAGGAATTAGCAGCTGCCACCAACGGATTCAATGATGCAAATTTGATAGGACAAGGTGGATTCGGTTATGTCCATAAGGGTGTTTTGCCTAGTGGAAAGGAAGTGGCAGTTAAGAGTCTTAAAGCAGGTAGTGGCCAAGGAGAAAGAGAGTTCCAAGCTGAGATTGACATCATTAGCCGTGTCCATCATCGCCATCTCGTATCACTTGTTGGATACTCTATTTCTGGTGGCCAGAGGATGCTGGTCTATGAATTTATTCCCAATAACACATTGGAATATCACCTCCATGGAAAGGGTAGGCCTACCATGGATTGGGCAACTAGAATGCGGATTGCAATAGGATCCGCTAAAGGGCTTGCTTATCTTCATGAGGACTGTCATCCTCGTATCATCCATCGCGATATCAAAGCTGCCAATGTCCTTATTGATGATAGCTTCGAAGCAAAGGTTGCTGATTTTGGATTGGCTAAGTTGACTACTGATAATAATACTCATGTATCGACTCGTGTCATGGGAACTTTCGGGTACCTAGCCCCTGAATATGCATCAAGTGGAAAATTGACAGAGAAGTCTGACGTTTTCTCATTTGGGGTCATGCTATTGGAACTCATAACTGGGAAGCGACCTGTTGATCACACAAATGCCATGGACGACAGCTTAGTAGACTGGGCTCGACCACTTCTGACTCGTGGACTAGAGGAGGATGGCAACTTTGGAGAGTTGGTTGATGCATTTTTGGAGGGAAACTACGATGCTCAAGAACTGTCAAGGATGGCAGCTTGTGCTGCTGGTAGCATTCGTCATTCTGCCAAGAAACGTCCAAAAATGAGCCAGATTGTAAGAATATTGGAAGGAGATGTCTCACTGGATGACTTGAGAGATGGGATTAAGCCGGGGCAAAATGTTGTTTACAACTCTTCACCTAGCTCAAATCAGTATGACACAATGCAATACAATGCTGATATGCAGAAGTTCAGAAAGGCAGTGTTCTCTAATAGCGACGAATTTGGCACCAGCAGTGGCTCCAGTGGTGAAGTGAGCCAGAAGCAGCAACGGCTCTAG 1899 0.4039 MSSPHNSSPDDSSPDNATPDNSTPDDSDNSSPPSQSPPPSSPPPSSPPPSSPPPSSPPPSSPPPSSPPPSSPPPLSPPPSSSSSPPPSPSPPTSNSPSPPSPNGSSQSPSPPGSSHSPPSFESPSPPHKSLDSPPSSRNSGSGSGSSNGGGNDSGGDGSSKAIVGAVLGVGSVLLILVIVCVVCNRKKKKKNTNTWNHNNYYNSGQHPSYYGGPHGDHVVRMQQNGMGPGGGGGWGAPPPPPMMMNSADFSSNYSTGPPPLPPPSPTLALGLKGGTFSYEELAAATNGFNDANLIGQGGFGYVHKGVLPSGKEVAVKSLKAGSGQGEREFQAEIDIISRVHHRHLVSLVGYSISGGQRMLVYEFIPNNTLEYHLHGKGRPTMDWATRMRIAIGSAKGLAYLHEDCHPRIIHRDIKAANVLIDDSFEAKVADFGLAKLTTDNNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLELITGKRPVDHTNAMDDSLVDWARPLLTRGLEEDGNFGELVDAFLEGNYDAQELSRMAACAAGSIRHSAKKRPKMSQIVRILEGDVSLDDLRDGIKPGQNVVYNSSPSSNQYDTMQYNADMQKFRKAVFSNSDEFGTSSGSSGEVSQKQQRL 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g00617 632 Gene3D Transferase(Phosphotransferase) domain 1 365 572 - -
Gma11g00617 632 SMART serkin_6 289 550 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma11g00617 632 MobiDBLite consensus disorder prediction 1 30 - -
Gma11g00617 632 Pfam Protein tyrosine and serine/threonine kinase 294 494 IPR001245 GO:0004672|GO:0006468
Gma11g00617 632 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 60 625 - -
Gma11g00617 632 Gene3D Phosphorylase Kinase; domain 1 269 364 - -
Gma11g00617 632 PANTHER RECEPTOR-LIKE KINASE 60 625 - -
Gma11g00617 632 ProSitePatterns Serine/Threonine protein kinases active-site signature. 409 421 IPR008271 GO:0004672|GO:0006468
Gma11g00617 632 SUPERFAMILY Protein kinase-like (PK-like) 268 562 IPR011009 -
Gma11g00617 632 MobiDBLite consensus disorder prediction 31 131 - -
Gma11g00617 632 ProSiteProfiles Protein kinase domain profile. 289 550 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma11g00617 632 PRINTS Proline rich extensin signature 12 24 - -
Gma11g00617 632 PRINTS Proline rich extensin signature 33 54 - -
Gma11g00617 632 PRINTS Proline rich extensin signature 57 73 - -
Gma11g00617 632 PRINTS Proline rich extensin signature 74 91 - -
Gma11g00617 632 MobiDBLite consensus disorder prediction 132 155 - -
Gma11g00617 632 ProSitePatterns Protein kinases ATP-binding region signature. 295 317 IPR017441 GO:0005524
Gma11g00617 632 MobiDBLite consensus disorder prediction 1 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g00617 Gma-Chr11 5113420 5117002 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g00617 153 613 Trihelix Transcription Factor Family AT1G70460 50.209 1.84e-155 462
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Gma11g00617 PK_Tyr_Ser-Thr 2.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g00617 - - gmx:100788987 912.524
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g00617 11 5113420 5117002 Gma11g00617 11 5113420 5117002 ECH
Gma11g00617 11 5113420 5117002 Gma16g01288 16 31445106 31449392 PCT
Gma11g00617 11 5113420 5117002 Gma02g00523 02 5215022 5219316 PCT
Gma16g01288 16 31445106 31449392 Gma11g00617 11 5113420 5117002 PCT
Gma02g00523 02 5215022 5219316 Gma11g00617 11 5113420 5117002 PCT