Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g00595 ATGAATCATCGACCACCTTTCCAAGACCACATGATGCTCATGTCTCAGTTATTCCCTGCTGATGCATACACTCAAATTATTTCTCAACAAGGAGAGACTAATAAGAAGCCAAGACGCCGTCGTAACAAGAAGAACAAAGGAGGAGAAAACGGTGCCTCGGAAGCCAACAAGAAGAGGAAGCTTAGTGAGGTGCAAGTTAATTTACTTGAACAAAACTTTGGAAATGAACGCAAACTTGACTCCGAAAGAAAGGATAGGCTGGCAATGGAGCTTGGTTTGGACCCTCGACAAGTTGCTGTGTGGTTTCAAAACAGAAGAGCCCGTTGGAAGAACAAAAAGTTGGAAGAAGAGTACTCCAGCCTTAAAAAAAATCATGAAGCCACCTTGCTTGAGAAATGTTGCCTGGAGAGTGAGGTGTTGAAGCTCAAAGAGCAACTTTCTGAGGCAGAGAAAGAGATTCAGAGGCTGCTAGAGAGTGCCGAGAGAGTCCCAAGCAACAGTTCTAGTTCGTCACAGTCACAATCAATGGAAGCGGTGGACCCACCATTCTTTGGGGAATTTGGAGTTGATGGATATGAGGATGATGTGTTTTACGTGCCTGAGACCCATTACATCAACGGCATGGAATGGATTAATCTGTATATGTAA 648 0.4414 MNHRPPFQDHMMLMSQLFPADAYTQIISQQGETNKKPRRRRNKKNKGGENGASEANKKRKLSEVQVNLLEQNFGNERKLDSERKDRLAMELGLDPRQVAVWFQNRRARWKNKKLEEEYSSLKKNHEATLLEKCCLESEVLKLKEQLSEAEKEIQRLLESAERVPSNSSSSSQSQSMEAVDPPFFGEFGVDGYEDDVFYVPETHYINGMEWINLYM 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g00595 215 PRINTS Lambda-repressor HTH signature 83 92 IPR000047 GO:0003677
Gma11g00595 215 PRINTS Lambda-repressor HTH signature 92 108 IPR000047 GO:0003677
Gma11g00595 215 MobiDBLite consensus disorder prediction 46 61 - -
Gma11g00595 215 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-40-LIKE 8 214 - -
Gma11g00595 215 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 8 214 IPR045224 GO:0003700
Gma11g00595 215 MobiDBLite consensus disorder prediction 28 61 - -
Gma11g00595 215 Coils Coil 52 72 - -
Gma11g00595 215 SUPERFAMILY Homeodomain-like 56 122 IPR009057 -
Gma11g00595 215 ProSiteProfiles 'Homeobox' domain profile. 52 112 IPR001356 GO:0003677
Gma11g00595 215 CDD homeodomain 57 113 IPR001356 GO:0003677
Gma11g00595 215 Gene3D - 48 122 - -
Gma11g00595 215 Coils Coil 139 163 - -
Gma11g00595 215 Coils Coil 104 131 - -
Gma11g00595 215 Pfam Homeodomain 57 111 IPR001356 GO:0003677
Gma11g00595 215 ProSitePatterns 'Homeobox' domain signature. 87 110 IPR017970 GO:0000981|GO:0006355
Gma11g00595 215 SMART HOX_1 55 116 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g00595 Gma-Chr11 4988444 4990799 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g00595 10 215 Homeobox Transcription Factor Family AT4G36740 57.674 4.76e-70 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Gma11g00595 Homeodomain 7.1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g00595 K09338 - gmx:100810736 407.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g00595 11 4988444 4990799 Gma11g00595 11 4988444 4990799 ECH
Gma01g01809 01 53692114 53694688 Gma11g00595 11 4988444 4990799 GST
Gma11g00595 11 4988444 4990799 Gma02g00535 02 5313538 5315377 PCT
Gma02g00535 02 5313538 5315377 Gma11g00595 11 4988444 4990799 PCT