Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g00579 ATGGTCTCTCATGTTATCAATCATATCCTTTGGCGTTTTGTTTTGATTATTGTAATTATCACCCTTTACACTCCAAACCTTAGTGCCGCAAAACAATCTAAAATAAATGGCTTGAAAATGAATGTGATCGATCGATGTTGGAGACTGAATCCTGAATGGAGGAGGCATCGACCTCAATTAGCAACATGTTCGGTGGGCTACACCGGCAAGATGACAAACAACATTGGTAAAGACCTCATCCATTATATTGTTATAGACCCTAGTGATGATCCTATAAACCCTAAACGTGGCACCTTGAGGTATGGAGCTTCTGTAATTCAAGGTAAAGTGTGGATCACATTCCAAAGAGACATGCACATTAAACTTGAGAGACCCCTTCTTATTAGTAGTTTCACCGCAATTGATGGTCGAGGGGTTAATGTCCACATTGCTAATAATGCATGCTTAATGATCTTTAAGGCTACCAACATAATCATCCATGGCATTCGAGTTCATCATTGCAAACCTCAAGCCCCAGGGGTCGTGATGGGGCCTGAAGGAAAAGTGATTCCTTTGGGCCACGTAGATGGGGATGCAATTAGATTGGTTACTGCTTCAAAGATTTGGATTGACCATAATACACTATATAATTGTCAAGATGGTCTACTTGATGTAACACGAGGATCCACTGATGTGACTATATCCAATAATTGGTTTAGAGACCAAGATAAGGTTATGCTTCTTGGACATGATGATGGATATGTGAGAGACCAGAATATGAAGGTTACTGTTGTGTACAATCACTTTGGGCCTAATTGTAATCAGCGCATGCCAAGGATTCGCCATGGGTATGCACATGTAGCAAACAATCTTTACTTAGGATGGGTGCAATATGCCATTGGTGGAAGCATGGGACCTAGCCTCAAAAGTGAAGCTAACCTCTTTATAGCACCTACAATAGGGAGTAAGGAGGTGACATGGAGAAAGAGTAATCATAACAATGGGGATACATGGGAATTTCATTCAGTGAAAGATGCTTTTGAAAATGGAGCCTCATTTACAGTAACAAAAGGAGGACGTGTGCCAAAACCAAATTATAGCAATGAACAATACTTTAAAGTTGTTGATGTCAACTTTGTTAGGTCGTTGACACGCTCATCGGGCATATTAGGATGCAGTAAAACCTCTGTATGTTGA 1176 0.4048 MVSHVINHILWRFVLIIVIITLYTPNLSAAKQSKINGLKMNVIDRCWRLNPEWRRHRPQLATCSVGYTGKMTNNIGKDLIHYIVIDPSDDPINPKRGTLRYGASVIQGKVWITFQRDMHIKLERPLLISSFTAIDGRGVNVHIANNACLMIFKATNIIIHGIRVHHCKPQAPGVVMGPEGKVIPLGHVDGDAIRLVTASKIWIDHNTLYNCQDGLLDVTRGSTDVTISNNWFRDQDKVMLLGHDDGYVRDQNMKVTVVYNHFGPNCNQRMPRIRHGYAHVANNLYLGWVQYAIGGSMGPSLKSEANLFIAPTIGSKEVTWRKSNHNNGDTWEFHSVKDAFENGASFTVTKGGRVPKPNYSNEQYFKVVDVNFVRSLTRSSGILGCSKTSVC 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g00579 391 SMART amb_all 117 314 IPR002022 -
Gma11g00579 391 SUPERFAMILY Pectin lyase-like 34 360 IPR011050 -
Gma11g00579 391 PANTHER PECTATE LYASE 2 388 - -
Gma11g00579 391 PANTHER PECTATE LYASE 18-RELATED 2 388 IPR045032 GO:0030570
Gma11g00579 391 Gene3D - 40 384 IPR012334 -
Gma11g00579 391 PRINTS Pollen allergen Amb family signature 88 113 IPR018082 -
Gma11g00579 391 PRINTS Pollen allergen Amb family signature 125 141 IPR018082 -
Gma11g00579 391 PRINTS Pollen allergen Amb family signature 189 210 IPR018082 -
Gma11g00579 391 PRINTS Pollen allergen Amb family signature 269 288 IPR018082 -
Gma11g00579 391 PRINTS Pollen allergen Amb family signature 291 310 IPR018082 -
Gma11g00579 391 PRINTS Pollen allergen Amb family signature 331 355 IPR018082 -
Gma11g00579 391 PRINTS Pollen allergen Amb family signature 362 385 IPR018082 -
Gma11g00579 391 Pfam Pectate lyase 128 308 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g00579 Gma-Chr11 4864973 4866498 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g00579 71 318 Polysaccharide Lyase AT5G09280 72.177 3.20e-142 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g00579 K01728 - gmx:100780437 816.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01821 01 53804226 53807395 Gma11g00579 11 4864973 4866498 GST