Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g00574 ATGGGTTGGTTTACCAAGTTGCTTAAGGGCTCTGATCATAAAATTTTACGAGGACAATACCATGGCAAATATGGAGAGGACAGAATTTGGGATAATCATCATAGTTCAATGGATGATTTGACTGATATTGAGAAAGAAGACATTGACCGTGCAATTGCACTTTCTCTGTCAGAGGAGGATCATAAAGGGAAAAAAGTTGTTGATGAGGAACTTTGTAAAATTGATGATGATGAGGAGGATGAACATCTTGTTAAAGTTCATCTAGATgaagatgaacgtcttgctaaaattcagcaagaagaagaagaacgtcttgctaaaattcaacaagaagatgagcatcttgctaaaattcaacaagaagaagaacgtcttgctaaaattcaacaagaagatgaatgtcttgctaaaattcaacaagaggatgaacgtcttgctaaaGCTCAACTTGAGGAAGACGAGCAACTTGCTAGGGCAATTCAAGAAAGCTTGAAAATTGGTTCTCCTCCTCAATATGACAATGGTTCTTCAATTCTATCTTTTCCTCACCTTTTCCCCCCTGGATACAGAATCTGTGCTGGATGCAAGACTGAGATTGGCCAAGGAAGATTTTTAAGTTGCATGGGAGGTGTCTGGCATCCAGAATGCTTCTGCTGCCATGCATGCCATCTTCCAATCACTGATTATGAGTTTTCCATGTCTAGCAATCGCCCTTACCATAAATCATGCTATAGGGAGAAGCATCACCCAAGATGTGATGTTTGCAAGAACTTTATCCCAACTAATTCATCTGGCCTCATTGAGTATAGAGCTCATCCTTTCTGGCTACAAAAATACTGCCCATCACATGAGCTTGATGGCACTTCTCGTTGTTGTAGTTGCGAAAGAATGGAGCCAAGGGATACAAAATATCTTTTGCTTGATGATGGTCGAAAGCTATGTTTAGAGTGTCTAGACTCATCAATTATGGATACTCATGAATGCCAACCTCTTTACCTTGAAATACAAGAATTTTATGAAGGTTTAAATATGAAATTGGAGCAACAAATTCCTATGCTCTTGGTTGAGAGACAAGCGCTGAATGAGGCTATGGAGGGAGAAAAGAATGGTCATCACCACTTACCCGAAACTAGAGGACTATGCTTGTCAGAAGAGCAAACTGTCACCACTATTTCAAGGAGGCCAAGGATTGCAGCAGGCTACCGAGCCATAGACATGATAACTGAACCTTATAGGCTGATCCGTTGTTGTGAAGTGACAGCCATTCTTGTTTTGTATGGCCTTCCTAGGTTGTTAACAGGATCAATCCTAGCTCATGAGATGATGCATGCATGGCTTAGGCTTAAAGGTTATCCTAACCTCAGTCCAGAAGTTGAAGAAGGAATCTGCCAAGTTTTGGCTCATATGTGGTTAGAATCAGAGCTCTATTCTGGATTTGGGAATGATGGTGCATCATCCTCAACATCATCTTTGTCTTCGTCATCACCTTCCTCCTCTTCTGTCTCAACAAAGAAGGGTAAACGGTCCGACTTTGAGAAGAAACTTGGTGATTTTTTTAAACACCAGATTGAGTCAGATACCTCCTCAGCTTATGGAGATGGATTCAGATTGGGTAACCAAGCAATGGTCAAGTATGGGCTTAAAAGGACCCTTGACCATATCCATATGACAGGAAGTTTTCCATATTAA 1689 0.3694 MGWFTKLLKGSDHKILRGQYHGKYGEDRIWDNHHSSMDDLTDIEKEDIDRAIALSLSEEDHKGKKVVDEELCKIDDDEEDEHLVKVHLDEDERLAKIQQEEEERLAKIQQEDEHLAKIQQEEERLAKIQQEDECLAKIQQEDERLAKAQLEEDEQLARAIQESLKIGSPPQYDNGSSILSFPHLFPPGYRICAGCKTEIGQGRFLSCMGGVWHPECFCCHACHLPITDYEFSMSSNRPYHKSCYREKHHPRCDVCKNFIPTNSSGLIEYRAHPFWLQKYCPSHELDGTSRCCSCERMEPRDTKYLLLDDGRKLCLECLDSSIMDTHECQPLYLEIQEFYEGLNMKLEQQIPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTVTTISRRPRIAAGYRAIDMITEPYRLIRCCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGYPNLSPEVEEGICQVLAHMWLESELYSGFGNDGASSSTSSLSSSSPSSSSVSTKKGKRSDFEKKLGDFFKHQIESDTSSAYGDGFRLGNQAMVKYGLKRTLDHIHMTGSFPY 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g00574 562 Pfam LIM domain 192 247 IPR001781 -
Gma11g00574 562 MobiDBLite consensus disorder prediction 487 506 - -
Gma11g00574 562 Pfam Protein DA1 341 557 IPR022087 -
Gma11g00574 562 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 219 275 - -
Gma11g00574 562 MobiDBLite consensus disorder prediction 487 504 - -
Gma11g00574 562 ProSitePatterns LIM zinc-binding domain signature. 192 226 IPR001781 -
Gma11g00574 562 ProSiteProfiles LIM domain profile. 190 250 IPR001781 -
Gma11g00574 562 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 1 122 - -
Gma11g00574 562 SMART lim_4 191 243 IPR001781 -
Gma11g00574 562 Coils Coil 111 158 - -
Gma11g00574 562 PANTHER PROTEIN DA1-RELATED 2 111 562 IPR045218 -
Gma11g00574 562 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 111 562 - -
Gma11g00574 562 CDD LIM_DA1 192 244 - -
Gma11g00574 562 PANTHER PROTEIN DA1-RELATED 2 1 122 IPR045218 -
Gma11g00574 562 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 184 217 - -
Gma11g00574 562 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 151 170 IPR003903 -
Gma11g00574 562 Gene3D Cysteine Rich Protein 188 249 - -
Gma11g00574 562 SMART uim 151 170 IPR003903 -
Gma11g00574 562 SMART uim 43 62 IPR003903 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g00574 Gma-Chr11 4796617 4801426 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gma11g00574 DA1-like 2e-102 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g00574 - - gmx:100778105 1140.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g00574 11 4796617 4801426 Gma11g00574 11 4796617 4801426 ECH
Gma01g01828 01 53874607 53882301 Gma11g00574 11 4796617 4801426 GST
Gma11g00574 11 4796617 4801426 Gma16g01309 16 31745913 31750281 PCT
Gma11g00574 11 4796617 4801426 Gma02g00547 02 5427287 5432453 PCT
Gma16g01309 16 31745913 31750281 Gma11g00574 11 4796617 4801426 PCT
Gma02g00547 02 5427287 5432453 Gma11g00574 11 4796617 4801426 PCT