Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g00572 ATGTCCCAAGATTTTCAACAAGGAATCTTCAGCTTCCCGAATGGGTTGGAGAGAGGAAGGCTAGTGAGTCCGCAGCAACAGATCCGGAGGGACAAAGTAAGGTTCGAGGCGGCGGCGCCATTGGTAGGGATAGAGGAGGAGGAACCGGTGTACGAGACCGCCGGGATGTTGTCGGAGATGTTTAATTTTCCGCCCGCGACGGAATTGTTGGAGCAGCAGCACGCGACGGCGACGTTCCGGGCGGCGAGGCAAGCCGGAGAGTGGTACGGAAACAGACAGCAACAGCAACAGATTTCAGGCATTAATGCTGACTCAGCAGCAGCCATGCAACTTTTTCTGATGAACCCTCAAACGAGGTCTCCTTCTCCTCCTCAAACCCACGCCACTCCTTCGTCAACGCTTCACATGCTGCTTCCAAATCCTTCTTCAAATTCTTCCCTCCAAGGATTTACTGGTTCGGCCGCGGGAGGGTCTTTTGGTCAATTCACATGGGTTCCTGAGAGTGCTCATCAACAAGGAGGCGTGGTGGAAGGGCAAGGTCTTTCGTTATCGTTGTCTTCTTCGCTGGAAGCAGCAAAAGCCGAGGAACTGAGGATGGGGGATAGTGGTTTTCTATATTACAATCATCAACAAGGTGGAGGTGGAGGAGGTGGTTCTTCTTCTTCTTCCGCGGTTCAGTTTCAGTACAAGAATAATAACAATAACCATCACCAAGCATTGCATTTGCAAGGGGCGATGGGACACGACAACAACCACCAGGGACATGTTGGGTTTGGGTCATCCTCGTTAGGTGTAGTTAATGTTCTAAGAAATTCAAAGTATGCGAAGGCTGCACAAGAGTTGCTGGAAGAGTTTTGCAGTGTAGGGAGGGGTCAGTTTAAGAAGAGCAAGTTCAATAGGCAGAATTCAAACCCTAATTCAAATGCCGGTGGTGGTGCTTCGCCTTCATCAAAAGATGCTCCTCCTCCTCCTCCTTTGTCAGCCGCTGATAGGATTGAGCATCAGAGAAGGAAGGTCAAACtactatcaatgcttgacgagGTGGACAGGAGATACAACCATTACTGCGAGCAAATGCAGATGGTAGTGAACTCATTTGACCTGATGATGGGTTTTGGGGCGGCAGTGCCGTACACAGCACTAGCGCAGAAAGCAATGTCTCGGCATTTCCGGTGTCTGAAGGAGGCGATAACAGCGCAGCTGAAGCAAAGTTGTGAGGTACTAGGAGAGAAAGATGGAGCGGGGAACTCAGGAGGTTTGACCAAGGGTGAGACCCCAAGGCTTAAGATGTTAGAACAAAGCCTAAGACAGCAGAGAGCCTTCCACCAGATGGGCATGATGGAACAAGAAGCTTGGAGACCCCAGAGAGGCTTGCCTGAACGTTCTGTCAACATTTTGAGAGCCTGGCTTTTCGAGCATTTTCTCCACCCGTATCCAAGCGATGCAGATAAGCATCTGTTGGCACGACAGACTGGCCTATCGCGAAATCAGGTATCAAACTGGTTCATTAATGCCAGGGTTCGGTTGTGGAAACCCATGGTGGAAGAAATGTACCAACAAGAACTTAAAGAAGCAGAGAGTGCAGAAGACAGAGAAAACAACAACAGCAACATTAGTGGCAACCAAGCACAAACTCCAACCACACCATCAGCGGCCACAACATCAACAGCAACAGCGCCACCACCACCACCACCAACGACAACAGCAACAAAACCGACAGGCAAAAGATCCGATGCCATCAATGCCCCCGATAGCGACCCTTCACAGCATGTTGCAATGAATAATAGACAAGGCTTCTCGGAAAACCAAGCAAAGAAGTCCACCGCATCCACCACCGCCACCACCACCACCGCCGCCGCCTCTGAGGTGGCGCCACCCGTGTCTCAGTGCTTCGACTCAGACCTGCCCCCACACAGATTAATGGCCTCTAATGACAACACGTGTCGCTTGGTCACAGCAGATTTTGGGACCGCATCTGCAAGTGCTGACATTGGATCCACACTCATTAGGTTTGGGACCACACCCGGTGACGTGTCACTCACCCTAGGGCTTCGCCACGCCGGGAACATGCCCTCTGAGAAAACTCCTTTCTCTGTTAGAGAATTTGGAGCCATTTAA 2118 0.5052 MSQDFQQGIFSFPNGLERGRLVSPQQQIRRDKVRFEAAAPLVGIEEEEPVYETAGMLSEMFNFPPATELLEQQHATATFRAARQAGEWYGNRQQQQQISGINADSAAAMQLFLMNPQTRSPSPPQTHATPSSTLHMLLPNPSSNSSLQGFTGSAAGGSFGQFTWVPESAHQQGGVVEGQGLSLSLSSSLEAAKAEELRMGDSGFLYYNHQQGGGGGGGSSSSSAVQFQYKNNNNNHHQALHLQGAMGHDNNHQGHVGFGSSSLGVVNVLRNSKYAKAAQELLEEFCSVGRGQFKKSKFNRQNSNPNSNAGGGASPSSKDAPPPPPLSAADRIEHQRRKVKLLSMLDEVDRRYNHYCEQMQMVVNSFDLMMGFGAAVPYTALAQKAMSRHFRCLKEAITAQLKQSCEVLGEKDGAGNSGGLTKGETPRLKMLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEEMYQQELKEAESAEDRENNNSNISGNQAQTPTTPSAATTSTATAPPPPPPTTTATKPTGKRSDAINAPDSDPSQHVAMNNRQGFSENQAKKSTASTTATTTTAAASEVAPPVSQCFDSDLPPHRLMASNDNTCRLVTADFGTASASADIGSTLIRFGTTPGDVSLTLGLRHAGNMPSEKTPFSVREFGAI 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g00572 705 MobiDBLite consensus disorder prediction 296 314 - -
Gma11g00572 705 SMART prehox3 263 399 IPR006563 -
Gma11g00572 705 ProSiteProfiles 'Homeobox' domain profile. 449 512 IPR001356 GO:0003677
Gma11g00572 705 Pfam Homeobox KN domain 469 508 IPR008422 GO:0003677|GO:0006355
Gma11g00572 705 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 2 45 693 - -
Gma11g00572 705 Gene3D - 455 517 - -
Gma11g00572 705 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 45 693 - -
Gma11g00572 705 MobiDBLite consensus disorder prediction 296 333 - -
Gma11g00572 705 MobiDBLite consensus disorder prediction 522 620 - -
Gma11g00572 705 MobiDBLite consensus disorder prediction 532 555 - -
Gma11g00572 705 CDD homeodomain 452 513 IPR001356 GO:0003677
Gma11g00572 705 Pfam Associated with HOX 268 398 IPR006563 -
Gma11g00572 705 SMART HOX_1 452 516 IPR001356 GO:0003677
Gma11g00572 705 SUPERFAMILY Homeodomain-like 453 519 IPR009057 -
Gma11g00572 705 Coils Coil 515 535 - -
Gma11g00572 705 MobiDBLite consensus disorder prediction 582 620 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g00572 Gma-Chr11 4767037 4774964 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g00572 1 499 Homeobox Transcription Factor Family AT4G36870 53.237 6.15e-152 451
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Gma11g00572 POX 5.2e-51 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g00572 - - gmx:100777243 1212.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g00572 11 4767037 4774964 Gma11g00572 11 4767037 4774964 ECH
Gma11g00572 11 4767037 4774964 Gma01g01829 01 53907401 53915369 ECH
Gma01g01829 01 53907401 53915369 Gma11g00572 11 4767037 4774964 GST
Gma11g00572 11 4767037 4774964 Gma16g01311 16 31806142 31814600 PCT
Gma11g00572 11 4767037 4774964 Gma02g00548 02 5472504 5479922 PCT
Gma16g01311 16 31806142 31814600 Gma11g00572 11 4767037 4774964 PCT
Gma02g00548 02 5472504 5479922 Gma11g00572 11 4767037 4774964 PCT