Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g00546 ATGATTCAAGAAATGTTGGGTGGTGCTAGTGCTAGCCACATACCAGGAGAAAGAAAAATCTCCATTAATAACGGAGGAGGAGGAAGAGCACTTCTACTAACACCACCCACATCATCATCTTCTCCTTCTTGCACAACAAGCATAACTACTTCCACCGCCACCGCCACCGCGACCTCATCGAATTCAGAGAACCAAAATTTGAGGTGCCCTCGTTGTGATTCATCAAACACAAAGTTCTGTTACTACAACAACTACAACCTCACTCAGCCTCGTCACTTCTGCAAGACGTGTCGCCGCTACTGGACCAAAGGCGGCGCTCTCAGGAATGTTCCCATCGGTGGTGGCTGCCGGAAAAGCAAAAGCTCCGGTGGCATGTCCAACTCGGTGGCGAAGCAAACCGCCACAAAGATGAAAGCGGTGGCATCAGAGCTTGGAAGGTCGCCACAAGGACTCTTCGACCAAGAGCTTCCACAAACCCCAATCCTGTGGGGTTCTCCACAAAATTCTCAACTGATGGCTTTACTAAGAGCTACCCAAAACCAAAACCCTAACCCTAACCCTAGTCCCATGTCAATTTCTGTCAAGGGAGAAGGGAACTTAATGGGATCTCACTCCCACATGGTGAGTACTGAGTCATTGCTCGCGAATGGGTTGTTGAATCCTAGAACTAGTCTAGGCTTTGATGATGGCCGTGTGGGAGAAGCACTTCCTTCACTGGGTCTATGCAGCTCTTTTTGGAGGAACAATCAAGATCAGACTCAGCAACAAAACAACGGTTTTGTAGTTGGAGAACATCAAAGTAGTGGAGTTCAAGAACTTTACCACAAGCTCAGGTCATCGTCATCAGTTAATTATTGGGGAAGTGATAACTCACCAGTGTTTCTAAGCAACATGGCTTCTTCATCCTCTTCTTTGTCCAACATTTTGGAGTCATCTTCAGTTTCTGGGAGTGAATTCGGGTGCTGGAATCCAACCCTTTCCTGGTCTGACCTTCCCACTACCAATGGAGCATATCCTTGA 1020 0.4755 MIQEMLGGASASHIPGERKISINNGGGGRALLLTPPTSSSSPSCTTSITTSTATATATSSNSENQNLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKSKSSGGMSNSVAKQTATKMKAVASELGRSPQGLFDQELPQTPILWGSPQNSQLMALLRATQNQNPNPNPSPMSISVKGEGNLMGSHSHMVSTESLLANGLLNPRTSLGFDDGRVGEALPSLGLCSSFWRNNQDQTQQQNNGFVVGEHQSSGVQELYHKLRSSSSVNYWGSDNSPVFLSNMASSSSSLSNILESSSVSGSEFGCWNPTLSWSDLPTTNGAYP 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g00546 339 Pfam Dof domain, zinc finger 65 121 IPR003851 GO:0003677|GO:0006355
Gma11g00546 339 ProSitePatterns Zinc finger Dof-type signature. 69 105 IPR003851 GO:0003677|GO:0006355
Gma11g00546 339 PANTHER DOF ZINC FINGER PROTEIN DOF5.1-LIKE 15 337 - -
Gma11g00546 339 ProSiteProfiles Zinc finger Dof-type profile. 67 121 IPR003851 GO:0003677|GO:0006355
Gma11g00546 339 MobiDBLite consensus disorder prediction 1 50 - -
Gma11g00546 339 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 15 337 IPR045174 GO:0003700|GO:0006355
Gma11g00546 339 MobiDBLite consensus disorder prediction 33 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g00546 Gma-Chr11 4553161 4554807 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g00546 33 122 C2C2-Dof Transcription Factor Family AT5G65590 62.222 1.28e-34 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gma11g00546 zf-Dof 2.4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g00546 - - gmx:100800420 586.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01859 01 54145863 54147422 Gma11g00546 11 4553161 4554807 GST
Gma11g00546 11 4553161 4554807 Gma17g01680 17 21126652 21128027 PCT
Gma17g01680 17 21126652 21128027 Gma11g00546 11 4553161 4554807 PCT