Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gma11g00539 | ATGGAGCTGAGTTTGGATTTGAGTTTAGGCTTTGTTCCCAAACCTCTTTCCCTGTTTTTCGCCGACGTTTCTGCGAACAGAGACAAAGTGGCCACACTCGATGGCTTCGTGCAGAGATTGGAGGAAGAATTGAAAAAGGTCGAGGCTTTCAAACGTGAGCTTCCTCTCTGCATTCTTCTCCTAAACGATGCTATAGCTAGATTGAAGGAGGAAAAAGTGAAGTGTTCGGGAATGCAAGATCCGCCACTGAAAACCAGTTCTGGAGGAAACAAAAATGAAAGCTCTGAGAAGATGAATTGGATGAGTTCAGCGCAGCTTTGGAGCACTCAGAAAACCAAATCGAGAAATGAGGAAGATGATAGGTCTGTGCCAGCGAACCCAATTAATGGGAATTCGTGTGTCCTCGAGAAGGAGGGTTCCCAAGTTCCGAGCTTTGGTTTGATGGCTCGTGCTTCTGAACTGAGTCATAGCAATTCCAAGAGTGTTGGTGGAGATATTAGTTCTGGCTCCTCTTTGCTCCGTGTTGAGGTACAGAGTCAGCCACAACCGCCGCAACATATGCAACAGAATCCGAGGAAACAACGCCGCTGCTGGTCGCCGGAGCTTCACCGCCGCTTTGTGGACGCTCTTCAACAACTTGGTGGAGCACAAGTGGCCACTCCTAAACAGATTAGAGAACTGATGCAGGTGGAAGGCCTTACAAATGATGAAGTGAAAAGCCATTTGCAAAAGTACAGGCTTCACGTTAGGAGATTTCCAGTTTCTTCAACTGGCCAGGCTGATAATGGGTCATGGATGTCACAAGATGAATCTGGGGATAAATCAAAGGGAAACAACATGTCACAGTCTGGTTCTCCACAAGGTCCTCTCACACCTCTGATCCTAGGAGGAGGAGGAGGAGGATCTGCTAAGGGTCTCTCAAGCCCTGGACAGAACAGTGTGGATGGAGAAGATGAGCAATCTGATTGCCGGAATTGGAAAGGAGGGCTCCACCACCACCAGCTTGAAGCTGATAATCAATGCCTCTAA | 1029 | 0.4801 | MELSLDLSLGFVPKPLSLFFADVSANRDKVATLDGFVQRLEEELKKVEAFKRELPLCILLLNDAIARLKEEKVKCSGMQDPPLKTSSGGNKNESSEKMNWMSSAQLWSTQKTKSRNEEDDRSVPANPINGNSCVLEKEGSQVPSFGLMARASELSHSNSKSVGGDISSGSSLLRVEVQSQPQPPQHMQQNPRKQRRCWSPELHRRFVDALQQLGGAQVATPKQIRELMQVEGLTNDEVKSHLQKYRLHVRRFPVSSTGQADNGSWMSQDESGDKSKGNNMSQSGSPQGPLTPLILGGGGGGSAKGLSSPGQNSVDGEDEQSDCRNWKGGLHHHQLEADNQCL | 342 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gma11g00539 | 342 | SUPERFAMILY | Homeodomain-like | 191 | 251 | IPR009057 | - | |
Gma11g00539 | 342 | Coils | Coil | 33 | 53 | - | - | |
Gma11g00539 | 342 | MobiDBLite | consensus disorder prediction | 80 | 111 | - | - | |
Gma11g00539 | 342 | TIGRFAM | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 193 | 248 | IPR006447 | GO:0003677 | |
Gma11g00539 | 342 | MobiDBLite | consensus disorder prediction | 255 | 289 | - | - | |
Gma11g00539 | 342 | MobiDBLite | consensus disorder prediction | 176 | 195 | - | - | |
Gma11g00539 | 342 | Pfam | Myb-like DNA-binding domain | 195 | 246 | IPR001005 | - | |
Gma11g00539 | 342 | MobiDBLite | consensus disorder prediction | 317 | 334 | - | - | |
Gma11g00539 | 342 | PANTHER | MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN | 1 | 338 | - | - | |
Gma11g00539 | 342 | MobiDBLite | consensus disorder prediction | 176 | 196 | - | - | |
Gma11g00539 | 342 | MobiDBLite | consensus disorder prediction | 255 | 342 | - | - | |
Gma11g00539 | 342 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR | 1 | 338 | IPR044787 | GO:0003700|GO:0006355 | |
Gma11g00539 | 342 | Gene3D | - | 192 | 249 | - | - | |
Gma11g00539 | 342 | MobiDBLite | consensus disorder prediction | 75 | 134 | - | - | |
Gma11g00539 | 342 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 190 | 250 | IPR017930 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gma11g00539 | Gma-Chr11 | 4493389 | 4495599 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gma11g00539 | 1 | 243 | G2-like Transcription Factor Family | AT4G37180 | 42.105 | 1.75e-52 | 173 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | GARP-G2-like | Gma11g00539 | Myb_DNA-binding | 1.4e-06 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gma11g00539 | - | - | gmx:100817326 | 647.506 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Gma01g01866 | 01 | 54210738 | 54212833 | Gma11g00539 | 11 | 4493389 | 4495599 | GST | |
Gma17g01657 | 17 | 19807321 | 19810251 | Gma11g00539 | 11 | 4493389 | 4495599 | PCT |