Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g00537 ATGTGCGCAGTAGTCAAGAACGGGGGAGGAAGAGAGGAATGGAGAATAGCCACTGTTCTTTTTGGGTACGGATCCAATTTGACCGGGAATAGCAGGTCACACTCAAACCCCCCTTACCCCCCTCGTTCCTCGTGCAAGGAAGGGTTTCAATTTGAGATTACAGAAATGTCCCTGTGCGTTGCGTGGTGGAGAGAGGATACGGGAGCGAGCGGTGACAATAGGGTTGACGCGCACGCCATCACAGCCTCGTCTCAATTTCTATCTTCCTTTGCGCCGCTCCATCTAATCACAGATCGCAAAAATCAAAATCAGAAGCTGCCTTGGTGTGTGAGGGACGAGAGAAAGAGAAAAGGAGAGAGATCGGAAAAGATGTCATCATCATCGAATTCGCCGTGCGCGGCGTGCAAGTTTCTGAGGCGAAAGTGCACACAGGAGTGCGTGTTCGCGCCGTACTTTCCGCCGGACAATCCTCAGAGGTTCGCTTACGTACACAAGGTTTTCGGCGCCAGCAACGTGGCGAAGCTGCTCAACGAGCTCAGTGCGGCGCAGCGAGACGACGCCGTTAAGTCCCTCGCGTACGAGGCCGAGGCTCGTCTCCGGGACCCCGTCTACGGCTGCGTGGGCCTCATCTCCGTCCTCCAGCACAAGCTCCGGCAGATCCAGGTCGAACTCAGCAATGCAAAGAAAGAACTCGCAAATTATATTGGTCCCCAAGCACTACAAGGAATTCCCGCTCCCATGCTCCAACAACACCCTAACAACCCTTTTCCCGGTGCCATGTATGGGAACATGCCGACTGCGACGGCCTCCGTTCACGGCGGGCAGTTGGTGATTCGCGACGCGCAGCCGGTGCCTCACCACCACCACCATCACCAGCAGCAGATCTTGGAGGCGCAACAGTTGGCTGCTGCTGTGGCGGCGAGGGAACAGCAAGAGATGTTCAGAAGTTATGAACACCAACAGCAGCAGGAGTTTCTACGGTTCAGTGGTGGTGGGTTCGATATGGGTTCGGCTTCTTCTGCTGGTGGGTTCAGCCAGGTGTCCCCAGCTGCTGGTTCTGCTGATCAGTTGTCTCCTTCTTTGGCTTTGGGATCATTCGATAACGCTTACCACATGCAACAGCAACCACAGCAAGGGGAACCTCACCACCATCATCATCCTCGTCACATTCCTCTTGCGGCTCAGCTACTTCTCCCTCCGCAGCAGAAGCAACAAACCCATCATGAGTCACAACTTCCCCTCCACCGGCAACATTCTGAGAGCGAGGAGTGTAGGAGTGTTGGTCCATCTTGTTGA 1296 0.5502 MCAVVKNGGGREEWRIATVLFGYGSNLTGNSRSHSNPPYPPRSSCKEGFQFEITEMSLCVAWWREDTGASGDNRVDAHAITASSQFLSSFAPLHLITDRKNQNQKLPWCVRDERKRKGERSEKMSSSSNSPCAACKFLRRKCTQECVFAPYFPPDNPQRFAYVHKVFGASNVAKLLNELSAAQRDDAVKSLAYEAEARLRDPVYGCVGLISVLQHKLRQIQVELSNAKKELANYIGPQALQGIPAPMLQQHPNNPFPGAMYGNMPTATASVHGGQLVIRDAQPVPHHHHHHQQQILEAQQLAAAVAAREQQEMFRSYEHQQQQEFLRFSGGGFDMGSASSAGGFSQVSPAAGSADQLSPSLALGSFDNAYHMQQQPQQGEPHHHHHPRHIPLAAQLLLPPQQKQQTHHESQLPLHRQHSESEECRSVGPSC 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g00537 431 PANTHER LOB DOMAIN-CONTAINING PROTEIN 36-LIKE 126 406 - -
Gma11g00537 431 MobiDBLite consensus disorder prediction 400 431 - -
Gma11g00537 431 Coils Coil 210 230 - -
Gma11g00537 431 MobiDBLite consensus disorder prediction 340 359 - -
Gma11g00537 431 MobiDBLite consensus disorder prediction 409 423 - -
Gma11g00537 431 ProSiteProfiles LOB domain profile. 130 231 IPR004883 -
Gma11g00537 431 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 126 406 - -
Gma11g00537 431 Pfam Lateral organ boundaries (LOB) domain 131 228 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g00537 Gma-Chr11 4476184 4481366 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g00537 126 358 AS2 family AT5G66870 56.225 1.99e-72 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gma11g00537 LOB 1.8e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g00537 - - gmx:100816778 559.296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01868 01 54227144 54229868 Gma11g00537 11 4476184 4481366 GST
Gma17g01655 17 19763166 19763741 Gma11g00537 11 4476184 4481366 PCT