Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g00509 ATGGAGCAGCGAAAGCTTGTGGTTTTGGGGATTCCGTGGGATGTCGATACTGAGGGATTAAGGGAATATATGAGCAAGTTTGGTGAGCTGGAAGATTGCATTGTCATGAAGGAGCGGTCAACTGGACGGTCTCGTGGTTTTGGATATGTTACATTTGCTTCAGTGGATGATGCTAAGGAAGTACTATCAAGTGAACATATTATTGGTAATAGGACGCTGGAAGTCAAAGTGGCAACACCAAAGGAGGAAATGAGGGCACCAGTCAAAAAAGTTACTAGAATATTTGTTGCCAGGATTCCACAATCAGTAACAGAAGCTACTTTCCGAAGTCATTTTGAGAAATATGGTGAAATAACAGATTTGTACATGCCAAAGGATCAAGGCTCCAAAATGCATCGTGGAATTGGTTTCATCACTTTTGCAAGTGCAGATTCTGTGGAGAATTTGATGTCAGAAACCCATGAACTGGGAGGTTCTGCTGTGGTGGTTGATCGAGCTACTCCTAAGGCAAGAGATGATGACTTTAAGCCAATGGGCAGAATGCCGCCGCCGCCACCGCCACCGCCACAAGGAGGAGGATATGGTGCATACAATGCTTATATCTCAGCAGCCACTAGATATGCAGCACTTGGTGCTCCTACTTTGTATGACCATCCTGGCCCAATTTATGGAAGGGGAGATGCTCGGAGAACTAGTAAAAAAATTTTTGTCGGCCGTCTTCCCCCAGAAGCAACTTCTGATGATCTTCGCCAATATTTTGGAAGATTTGGTCGTATATTAGATGTTTATGTTCCAAGGGATCCTAAGAGAGCAGGTCATAGAGGTTTTGGATTTGTTACTTTTGCTGAAGATGGTGCAGCAGATCGCGTCTCTCGAAGGTCTCATGAGATTTGTGGACATCCGGTGGCAATAGATTCGGCTACTCCTGTTGATGATGCAGGGCCCAGTGGGAATTTTATGATGAATAGTATGGAATCTTTTGGGGGATATGGTGGTCCTGTGCGATCTTATGGGAGGATGTATGGTAGCTTGGACTTTGATGATTGGGGTTATGGAATTGGGAGACCATCAAGAGCAGCAGATTGGAGGTATAGACCATACTAG 1104 0.4484 MEQRKLVVLGIPWDVDTEGLREYMSKFGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLSSEHIIGNRTLEVKVATPKEEMRAPVKKVTRIFVARIPQSVTEATFRSHFEKYGEITDLYMPKDQGSKMHRGIGFITFASADSVENLMSETHELGGSAVVVDRATPKARDDDFKPMGRMPPPPPPPPQGGGYGAYNAYISAATRYAALGAPTLYDHPGPIYGRGDARRTSKKIFVGRLPPEATSDDLRQYFGRFGRILDVYVPRDPKRAGHRGFGFVTFAEDGAADRVSRRSHEICGHPVAIDSATPVDDAGPSGNFMMNSMESFGGYGGPVRSYGRMYGSLDFDDWGYGIGRPSRAADWRYRPY 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g00509 367 Gene3D - 1 88 IPR012677 -
Gma11g00509 367 Gene3D - 89 175 IPR012677 -
Gma11g00509 367 SUPERFAMILY RNA-binding domain, RBD 3 86 IPR035979 GO:0003676
Gma11g00509 367 Gene3D - 227 313 IPR012677 -
Gma11g00509 367 SMART rrm1_1 93 164 IPR000504 GO:0003723
Gma11g00509 367 SMART rrm1_1 5 76 IPR000504 GO:0003723
Gma11g00509 367 SMART rrm1_1 234 305 IPR000504 GO:0003723
Gma11g00509 367 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 233 309 IPR000504 GO:0003723
Gma11g00509 367 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 235 290 IPR000504 GO:0003723
Gma11g00509 367 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6 73 IPR000504 GO:0003723
Gma11g00509 367 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 152 IPR000504 GO:0003723
Gma11g00509 367 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 168 IPR000504 GO:0003723
Gma11g00509 367 SUPERFAMILY RNA-binding domain, RBD 227 332 IPR035979 GO:0003676
Gma11g00509 367 PANTHER OS01G0945800 PROTEIN 3 367 - -
Gma11g00509 367 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 3 367 - -
Gma11g00509 367 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 80 IPR000504 GO:0003723
Gma11g00509 367 SUPERFAMILY RNA-binding domain, RBD 89 195 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g00509 Gma-Chr11 4259411 4263236 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g00509 6 282 Eukaryotic Initiation Factors Gene Family AT2G36660 21.352 7.87e-13 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g00509 K14411 - gmx:100808084 722.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01894 01 54489888 54494474 Gma11g00509 11 4259411 4263236 GST