Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g00490 aTGGAGGGTGAAGGAAGAAGAAGAGAAGGAGGAGAGAGAGAAACAGCAACAGCAGCAGCAACGAGGAAGGTGGTGGAGGGTGCTGATCAGAGAAGATACAAAGGAATAAGGATGAGGAAGTGGGGCAAGTGGGTCGCTGAAATTAGAGAACCCAATAAGCGTTCAAGGATTTGGCTCGGTTCCTATTCTACCCCTGTCGCAGCCGCACGTGCCTACGACACCGCCGTCTTTTACCTTCGAGGACCCTCCGCGCGTCTTAACTTCCCGGAGCTTCTCATCGGAGAAGGCGCCGCCGCCCTCACCGGCGGCTGTGACATGTCAGCAGCTTCTATTAGGAAGAAGGCCTCCGAGGTCGGTGCTAGAGTCGATGCTCTTCAGGCAACCCTTCACCACCATCACCACCATGTTGTGCCACCACGGCAGCTTCTCTCTGCCAGCTGTGGCGGTGGGTCCGGTGATTTTGCAGTGCGGGTTGTTGACCTGAATAAGATGCCCGAACCCGAGAGCTCCGACTGTGAGTGGAACGTGAATTGA 534 0.5581 MEGEGRRREGGERETATAAATRKVVEGADQRRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFPELLIGEGAAALTGGCDMSAASIRKKASEVGARVDALQATLHHHHHHVVPPRQLLSASCGGGSGDFAVRVVDLNKMPEPESSDCEWNVN 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g00490 177 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 14 171 - -
Gma11g00490 177 SUPERFAMILY DNA-binding domain 32 90 IPR016177 GO:0003677
Gma11g00490 177 CDD AP2 32 91 IPR001471 GO:0003700|GO:0006355
Gma11g00490 177 Pfam AP2 domain 32 81 IPR001471 GO:0003700|GO:0006355
Gma11g00490 177 Gene3D AP2/ERF domain 31 90 IPR036955 GO:0003700|GO:0006355
Gma11g00490 177 SMART rav1_2 32 95 IPR001471 GO:0003700|GO:0006355
Gma11g00490 177 MobiDBLite consensus disorder prediction 1 16 - -
Gma11g00490 177 MobiDBLite consensus disorder prediction 1 23 - -
Gma11g00490 177 ProSiteProfiles AP2/ERF domain profile. 32 89 IPR001471 GO:0003700|GO:0006355
Gma11g00490 177 PRINTS Ethylene responsive element binding protein signature 33 44 IPR001471 GO:0003700|GO:0006355
Gma11g00490 177 PRINTS Ethylene responsive element binding protein signature 71 91 IPR001471 GO:0003700|GO:0006355
Gma11g00490 177 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-10 14 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g00490 Gma-Chr11 4088754 4089287 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g00490 9 174 AP2-EREBP Transcription Factor Family AT5G67190 54.787 1.65e-56 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma11g00490 AP2 1.2e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g00490 K09286 - gmx:100783682 324.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01914 01 54687613 54688506 Gma11g00490 11 4088754 4089287 GST
Gma11g00490 11 4088754 4089287 Gma17g01564 17 16108889 16110066 PCT
Gma17g01564 17 16108889 16110066 Gma11g00490 11 4088754 4089287 PCT