Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g00479 ATGCCTCGCCCACATTCTCCTTCTTTCCTCCTCTGTCAAGAACACTACTCTTTCACTTTCCAACAACATTCTCAAACTCTCTCCAACACCCAACCTTCTCCTTTGACTTTTCCCGACAACCTCCAACACGACCTCCTTCTCTCTCTACTCTCCAAACAGCGCGCCACGCATTCCACTCTCTCCCCTCGCCACCACGTTGTACGTTTGATTTCTAAACTCTCCAACTTCCACGGCTTCTCTCCTCTCACCACCGTTCTCGCCGTTAACTACTTCGACAGGTTCGTCGCCACCCTAAGGTTTCAGAGCGAACTAAAACCATGGATGACTCAACTGACCGCAGTTGCTTGCGTCTCTCTCGCCGCCAAAGTGGAGGAGACACGAGTGCCACTTCTTTCGGACTTCCAAGTGGAGGAATCGAAATTCTTGTTTGAAGCAAAGACTATACAGAGAATGGAACTCCTTGTGTTGTCCACTCTCGAATGGAAAATGAACCCCGTCACCCCAATTTCTTTCTTTCAACACTTTCTCACAAGCCTTGGTTTAAAGCGCCATTTGCATTCGGAGTCTCTCCGTAGGTGCCAACGTCTTCTTCTCTCTGTCATTGCAGATTCAAGGGTTATGAGTTATCTTCCTTCTACAGTGGCTGCTGCTATAATGATCCACGTTATCAAAGAGATTGAGCCGTTGAATGCTACGGAGTACCGAAATCAGCTACTTGGTTTACTTAAAACTAGTGAGGAACAAGTGGATGAGTGCTACAAACTTATGTTGAGACTATTAGTTTGCAGCAAAGGCATTCACAATCTTAGGCGCAAGCGTTTGTCTGAACCTAGTAGCCCAGATGGGGTCATTGATGCATCTTTCAGTTGTGACAGTTCAAATGATTCGTGGACAGTTGCATCACCTTCAGTGGGGCCACTGATTAAGAGGAGAAAACCTCAGGACCAGCAGATGCCGCTGCCTCCGGTGAATCGAGTGGCCATTGATGTTCTAAAAACTCCTCGTTAA 1008 0.4722 MPRPHSPSFLLCQEHYSFTFQQHSQTLSNTQPSPLTFPDNLQHDLLLSLLSKQRATHSTLSPRHHVVRLISKLSNFHGFSPLTTVLAVNYFDRFVATLRFQSELKPWMTQLTAVACVSLAAKVEETRVPLLSDFQVEESKFLFEAKTIQRMELLVLSTLEWKMNPVTPISFFQHFLTSLGLKRHLHSESLRRCQRLLLSVIADSRVMSYLPSTVAAAIMIHVIKEIEPLNATEYRNQLLGLLKTSEEQVDECYKLMLRLLVCSKGIHNLRRKRLSEPSSPDGVIDASFSCDSSNDSWTVASPSVGPLIKRRKPQDQQMPLPPVNRVAIDVLKTPR 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g00479 335 PANTHER CYCLINS 29 315 IPR039361 -
Gma11g00479 335 Gene3D - 57 164 - -
Gma11g00479 335 SUPERFAMILY Cyclin-like 148 269 IPR036915 -
Gma11g00479 335 Gene3D - 165 254 - -
Gma11g00479 335 CDD CYCLIN 63 156 IPR013763 -
Gma11g00479 335 SUPERFAMILY Cyclin-like 48 164 IPR036915 -
Gma11g00479 335 SMART Cyclin_C_2 166 292 IPR004367 -
Gma11g00479 335 Pfam Cyclin, N-terminal domain 56 164 IPR006671 -
Gma11g00479 335 Pfam Cyclin, C-terminal domain 166 265 IPR004367 -
Gma11g00479 335 PANTHER CYCLIN-D3-2 29 315 - -
Gma11g00479 335 SMART cyclin_7 68 157 IPR013763 -
Gma11g00479 335 SMART cyclin_7 174 258 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g00479 Gma-Chr11 4013612 4015682 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g00479 44 325 Core Cell Cycle Gene Families AT5G67260 48.185 1.11e-89 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g00479 K14505 - gmx:100807175 648.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01926 01 54777639 54778932 Gma11g00479 11 4013612 4015682 GST
Gma11g00479 11 4013612 4015682 Gma10g02487 10 52256917 52258977 PCT
Gma11g00479 11 4013612 4015682 Gma20g01217 20 39023711 39026146 PCT
Gma17g01549 17 15735804 15737772 Gma11g00479 11 4013612 4015682 PCT
Gma05g00959 05 27991145 27992594 Gma11g00479 11 4013612 4015682 PCT