Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g00433 ATGGGTGCTCCTAAGCAGAAATGGACTGCAGAGGAAGAAGCAGCGTTGAAAGCTGGAGTAGTCAAACATGGGGCTGGAAAATGGCGCACCATACTTACAGACCCAGAGTTCAGTTCTATTTTGCGCATGCGGTCAAATGTAGATCTCAAGGACAAATGGAGGAACATAAATGTGACAGCAATATGGGGATCTAGGCAGAAGGCAAAGCTTGCTCTTAAAAAAAACCTACTACCATCCCCCAAAATTGACCATAACCACATGGCCTTGAGTACTGTAGTTCAGCGTGACAAAGAAGTTGCAGATCCCAAGCCTCTGGCAGTTTCTAGTGGGACATCTCCTAATTCAAAGGAAAAAACATCAAAGCTACAGAACTTCCAGTTGGATAATCTTATATTGGAGTCCATTATCAAGTTGAAGGAGCCAAGGGGTTCTGACAAGGCAGCAATTGCTGCATATATAGAGGATCAATACTGTTCTACACCGACCCTCAGAAAGTTACTGTCAACAAAACTGAAGCACATGGTGGCCTGTGGAAAATTAATGAAGGTCAAGCACAAGTACAGGATTGCAACAAATTTAACAATATCTGAGAAAAGAAGATGCTCTTCCTTGGTACTCCTGGAAGGGAGGCCCAAAGATTCTCCAAAAGCAGAGAAGACTGGTGTCCACATCCTTTCAAAATCCGAAATTGATGCAGAGCTATCAAAAATGAAGGGTGTGACACCTCAAGAGGCGGCAGCGGCAGCTGCGAAAGCAGTTGCAGAGGCAGAAGCTGCCATTGCCGAGGCTGAGGCAGCAGCTAGGGAGGCAGATGCTGCAGAAGCTGAGGCAGAGGCTGCACGAGTGTTTGCGAAAGCAGCAATGAAGGCACTAAAATGCAAGACACTTCGTGTTTGCTCTATTTCACCATTTCCTATTGCCTATCCAATTGTTCCAGAATAA 942 0.4544 MGAPKQKWTAEEEAALKAGVVKHGAGKWRTILTDPEFSSILRMRSNVDLKDKWRNINVTAIWGSRQKAKLALKKNLLPSPKIDHNHMALSTVVQRDKEVADPKPLAVSSGTSPNSKEKTSKLQNFQLDNLILESIIKLKEPRGSDKAAIAAYIEDQYCSTPTLRKLLSTKLKHMVACGKLMKVKHKYRIATNLTISEKRRCSSLVLLEGRPKDSPKAEKTGVHILSKSEIDAELSKMKGVTPQEAAAAAAKAVAEAEAAIAEAEAAAREADAAEAEAEAARVFAKAAMKALKCKTLRVCSISPFPIAYPIVPE 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g00433 313 SUPERFAMILY Homeodomain-like 2 67 IPR009057 -
Gma11g00433 313 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Gma11g00433 313 SUPERFAMILY "Winged helix" DNA-binding domain 121 200 IPR036390 -
Gma11g00433 313 CDD SANT_TRF 6 57 - -
Gma11g00433 313 Pfam linker histone H1 and H5 family 128 185 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gma11g00433 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Gma11g00433 313 Gene3D - 114 221 IPR036388 -
Gma11g00433 313 SMART h15plus2 121 186 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gma11g00433 313 Gene3D - 2 59 - -
Gma11g00433 313 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 115 191 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gma11g00433 313 PANTHER SINGLE MYB HISTONE 4 1 297 IPR044597 GO:0003691
Gma11g00433 313 Coils Coil 246 280 - -
Gma11g00433 313 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Gma11g00433 313 MobiDBLite consensus disorder prediction 96 119 - -
Gma11g00433 313 SMART sant 4 59 IPR001005 -
Gma11g00433 313 PANTHER MYB TRANSCRIPTION FACTOR 1 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g00433 Gma-Chr11 3588156 3590739 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g00433 1 294 Single Myb Histone (SMH) Gene Family AT5G67580 54.392 1.64e-76 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gma11g00433 Linker_histone 1.2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g00433 K09422 - gmx:100796539 503.056
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01975 01 55193175 55200400 Gma11g00433 11 3588156 3590739 GST
Gma11g00433 11 3588156 3590739 Gma17g01479 17 14163542 14173066 PCT
Gma11g00433 11 3588156 3590739 Gma05g01070 05 30560957 30564718 PCT
Gma17g01479 17 14163542 14173066 Gma11g00433 11 3588156 3590739 PCT
Gma05g01070 05 30560957 30564718 Gma11g00433 11 3588156 3590739 PCT