Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g00399 ATGATGGAAATTGCGAACCACTACTACTTGCCTGAACTTGGAATTGAGGATCCAACCTTGTTTGATCAATACCCGATGGATTCATTTGCATGTCCACTCGATGACTTTGACTTCGAGTCTTTCTCCGGGTCCCCAGAGAGCAACTCCTCTTATCAGTTCAACTCCGAAAGCACACCAAATTGTTTCCCTGCTGAAAGTCCTGATCAGTCTTTTGTCCCTGCAAGACCAACCAAGAGGCTCAAGACATTCAATACCTCCAACACTTGTGCCAGTGACATAATTTCCCACAAGGTTTCTGCCTCTTCATCCTCCCAAGTTATTTCCTTTGACCACTTCAATGCCCCATCAGATGCTTCTTCCCTGCAATTTCATCGAAACCTGGACTTCGATGTGAAGCCGAAAATCGAGAAAGCGTCTAGTGGGAACATGGATTTTGCAGCTTTCGTTTCTCACGGTTCGTATGTGGACAAAACATTCCTAAGTTCTGATACGAATCAGGTTGGAATAACCTCTAGGAACCCAATCCAAGCTCAAGAGCACGTAATAGCTGAAAGAAAACGGAGGGAAAAGCTCAGCCAGAGGTTCATTGCTCTTTCCGCCATCCTCCCTGGCCTCAAGAAGATGGATAAGGCTTCTGTTTTGGGAGATGCTATAAAGTATGTGAAACAACTACAAGAACGTGTGCAAACTCTGGAGGAGCAAGCAGCGAAGAGAACAGCAGGGTCGAGAGTGCTGGTGAAAAGATCTATTCTCTTTGCTGATGATGAAAATTCTGACAGCCACTGCGAGCATTCACTCCCAGAAATCGAAGTCAGAGTTTCTGGGAAAGACGTACTCATCAGAACTCAATGCGACAAACACAGTGGACATGCTGCAATGATACTCAGCGAGTTAGAAAAGCTTCACTTCATTGTCCAGAGTAGCAGCTTTTTGCCCTTCGGCAATAACAATACTGATGTAACTATTATTGCTCAGATGAACAAGGAAAACTGCATGACAGCAAAGGATCTCCTAGGAAGGCTACGACAGGCGTTGAAGCAGTTCATTTGA 1050 0.4505 MMEIANHYYLPELGIEDPTLFDQYPMDSFACPLDDFDFESFSGSPESNSSYQFNSESTPNCFPAESPDQSFVPARPTKRLKTFNTSNTCASDIISHKVSASSSSQVISFDHFNAPSDASSLQFHRNLDFDVKPKIEKASSGNMDFAAFVSHGSYVDKTFLSSDTNQVGITSRNPIQAQEHVIAERKRREKLSQRFIALSAILPGLKKMDKASVLGDAIKYVKQLQERVQTLEEQAAKRTAGSRVLVKRSILFADDENSDSHCEHSLPEIEVRVSGKDVLIRTQCDKHSGHAAMILSELEKLHFIVQSSSFLPFGNNNTDVTIIAQMNKENCMTAKDLLGRLRQALKQFI 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g00399 349 PANTHER BHLH TRANSCRIPTION FACTOR 1 348 - -
Gma11g00399 349 MobiDBLite consensus disorder prediction 43 68 - -
Gma11g00399 349 Pfam Helix-loop-helix DNA-binding domain 178 225 IPR011598 GO:0046983
Gma11g00399 349 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 175 224 IPR011598 GO:0046983
Gma11g00399 349 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 179 241 IPR036638 GO:0046983
Gma11g00399 349 Gene3D - 176 243 IPR036638 GO:0046983
Gma11g00399 349 CDD bHLH_AtNAI1_like 177 249 - -
Gma11g00399 349 Coils Coil 214 241 - -
Gma11g00399 349 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 1 348 - -
Gma11g00399 349 MobiDBLite consensus disorder prediction 43 65 - -
Gma11g00399 349 SMART finulus 181 230 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g00399 Gma-Chr11 3276624 3279067 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g00399 2 349 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 38.375 1.08e-61 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma11g00399 HLH 3.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g00399 - - gmx:100791810 667.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g02010 01 55511428 55517186 Gma11g00399 11 3276624 3279067 GST
Gma11g00399 11 3276624 3279067 Gma17g01430 17 13503017 13506350 PCT
Gma11g00399 11 3276624 3279067 Gma05g01118 05 31772416 31776668 PCT
Gma17g01430 17 13503017 13506350 Gma11g00399 11 3276624 3279067 PCT
Gma05g01118 05 31772416 31776668 Gma11g00399 11 3276624 3279067 PCT