Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g00398 ATGGACGACGCATCAGAAGCCAGCTGGTTATCTGATTTGATGTTGAAGGAAACGGAGGATTGCAACTTGTTCCGACACAGTCACCTTGAGACGTTGCTCGACGATGATGACGAGTTACTTTCGCATGAGATAGCAAGTGCCTTTGAGAACTTGCACCAACCTTTGTATTCGGAGACTTTTGAAAGGTCCACCAAGCAGCCCAAAACGAATGCCTCTTCCTCCCCTTCTTCTCCAACCTCCAAGATTCTTCTGTCTTTCGACAACTCCTCCGATTCTGCTGCCTTAAGCCCAAATCAGATCAAGAACAAAGGTGTTTCAGTTTCAGTTTCACTACCACAAACCCGAAAACGTTCATCAGAAAACCACAACTTTCAAACTGAAAGCCCCAAAGGCCCAAGAAGCTACAAGTCCCCATCTTACGCTCGGGATCACATCATCGCCGAGAGAAAACGAAGAGAGAAGCTCAGCCAGAGCTTAATCGCTCTAGCTGCTCTTATTCCCGGCTTAAAGAAGATGGACAGGGCATCGGTGCTGGGAAATGCTATAAAGTACGTGAAAGAGCTGCAAGAGCGTCTGAGAATGCTTGAAGAAGAGAACAAGGTGATGGTGAACAAAGCAAAGCTCAGCTGCGAAGACGATATCGATGGTTCAGCTTCACGTGAAGATGAAGAAGGCAGTGAAAGACTCCCCCGTGTGGAAGCGAGAGTGTCAGAGAAGGACGTGCTCCTTCGGATCCACTGCCAAAAGCAGAAGGGGCTTTTGCTCAAAATACTTGTCGAGATTCAAAAATTCCATCTCTTTGTTGTCAGTAGCAGTGTCCTTCCTTTCGGGGATTCCATACTTGACATAACCATTGTTGCTCAGATGGAAAAGGGGTACAATTTGACCATTAATGATATTGTAAAAAACCTACGCGTGGCTACTTTGAAATCCATGTCATAA 942 0.4607 MDDASEASWLSDLMLKETEDCNLFRHSHLETLLDDDDELLSHEIASAFENLHQPLYSETFERSTKQPKTNASSSPSSPTSKILLSFDNSSDSAALSPNQIKNKGVSVSVSLPQTRKRSSENHNFQTESPKGPRSYKSPSYARDHIIAERKRREKLSQSLIALAALIPGLKKMDRASVLGNAIKYVKELQERLRMLEEENKVMVNKAKLSCEDDIDGSASREDEEGSERLPRVEARVSEKDVLLRIHCQKQKGLLLKILVEIQKFHLFVVSSSVLPFGDSILDITIVAQMEKGYNLTINDIVKNLRVATLKSMS 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g00398 313 Pfam Helix-loop-helix DNA-binding domain 144 189 IPR011598 GO:0046983
Gma11g00398 313 PANTHER BHLH TRANSCRIPTION FACTOR 47 311 - -
Gma11g00398 313 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 142 204 IPR036638 GO:0046983
Gma11g00398 313 SMART finulus 145 194 IPR011598 GO:0046983
Gma11g00398 313 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 139 188 IPR011598 GO:0046983
Gma11g00398 313 Coils Coil 178 205 - -
Gma11g00398 313 MobiDBLite consensus disorder prediction 60 83 - -
Gma11g00398 313 MobiDBLite consensus disorder prediction 104 140 - -
Gma11g00398 313 PANTHER BHLH TRANSCRIPTION FACTOR 47 311 - -
Gma11g00398 313 MobiDBLite consensus disorder prediction 104 133 - -
Gma11g00398 313 Gene3D - 134 205 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g00398 Gma-Chr11 3262373 3264934 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g00398 9 307 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 38.602 3.38e-53 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma11g00398 HLH 5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g00398 - - gmx:100776539 578.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g02012 01 55530567 55533434 Gma11g00398 11 3262373 3264934 GST
Gma11g00398 11 3262373 3264934 Gma17g01429 17 13481040 13483540 PCT
Gma11g00398 11 3262373 3264934 Gma05g01121 05 31832034 31834228 PCT
Gma17g01429 17 13481040 13483540 Gma11g00398 11 3262373 3264934 PCT
Gma05g01121 05 31832034 31834228 Gma11g00398 11 3262373 3264934 PCT