Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g00394 ATGGCTGCAGAGATTGGCCTAGTCTCCATGACCCAGATCCAAAACCTATCGCAACCCCAACACCCCAAAACCCAACAACAACAACAACCTCAACCAAAAAACCCTAACAGCACCACCACCACCTCCTCTTCTACTTGGATGTGGAACCCTAGGAAGCAACAACATCAGCAGCAGCAGGTAGAAGATGATGATGACTCTTGGGAGGTCAGAGCTTTTGCAGAAGACACAAGGAACATCATGGGCACCACATGGCCTCCTAGGTCCTACACCTGCACCTTCTGCAGAAGGGAGTTTCGCTCCGCCCAAGCCCTCGGCGGCCACATGAACGTCCACCGCCGCGACCGCGCTCGCCTCCACCAAGCTCCAGTACCCTCCTCCTCCTCCAACCCCATGACCTCTTCTCTTCCCACTTCACCCTTCATCAATATCCCTCCTCAAGACCTTGTTGCAAATGCTGGCTTGTGCCTCCTCTACCACTTGCCCAAAAGCCCTAGTAGTACTGCACCACCCTTCCCACCTTCCCCCACTACTCCTTCTCCTTCCACTCTTCTCTCTATCTCTTCTTATCCTACAACCAACTTTCTGATGCAAACTTCCTTTAATTTTCCCGGTGCACCCGCAACTGGGATCAATACTACTACTACTACTACTGTTTCCTCTTTGTGCTATAACTCTAGCAAAGTGGAACAATCCGCAACTTCCTCCTCTATTGATCATAATGGCCACCTCGAAGAGCTTGATCTAGAGCTCCGCCTAGGCCACAAACCAACACCAACCTCATAA 783 0.5134 MAAEIGLVSMTQIQNLSQPQHPKTQQQQQPQPKNPNSTTTTSSSTWMWNPRKQQHQQQQVEDDDDSWEVRAFAEDTRNIMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARLHQAPVPSSSSNPMTSSLPTSPFINIPPQDLVANAGLCLLYHLPKSPSSTAPPFPPSPTTPSPSTLLSISSYPTTNFLMQTSFNFPGAPATGINTTTTTTVSSLCYNSSKVEQSATSSSIDHNGHLEELDLELRLGHKPTPTS 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g00394 260 MobiDBLite consensus disorder prediction 8 55 - -
Gma11g00394 260 SUPERFAMILY beta-beta-alpha zinc fingers 86 116 IPR036236 -
Gma11g00394 260 Gene3D Classic Zinc Finger 80 133 - -
Gma11g00394 260 SMART c2h2final6 89 111 IPR013087 -
Gma11g00394 260 ProSiteProfiles Zinc finger C2H2 type domain profile. 89 116 IPR013087 -
Gma11g00394 260 MobiDBLite consensus disorder prediction 1 65 - -
Gma11g00394 260 Pfam C2H2-type zinc finger 89 113 - -
Gma11g00394 260 PANTHER OS07G0101800 PROTEIN 47 253 - -
Gma11g00394 260 PANTHER ZINC FINGER C2H2-TYPE/INTEGRASE DNA-BINDING DOMAIN-CONTAINING PROTEIN-RELATED 47 253 - -
Gma11g00394 260 ProSitePatterns Zinc finger C2H2 type domain signature. 91 111 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g00394 Gma-Chr11 3219692 3220474 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g00394 42 256 C2H2 Transcription Factor Family AT4G17810 38.914 2.80e-41 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma11g00394 zf-C2H2_6 5.6e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g00394 - - gmx:100790748 383.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g00394 11 3219692 3220474 Gma11g00394 11 3219692 3220474 ECH
Gma01g02016 01 55574414 55575166 Gma11g00394 11 3219692 3220474 GST
Gma11g00394 11 3219692 3220474 Gma17g01424 17 13411372 13412067 PCT
Gma11g00394 11 3219692 3220474 Gma05g01125 05 32105562 32106236 PCT
Gma17g01424 17 13411372 13412067 Gma11g00394 11 3219692 3220474 PCT
Gma05g01125 05 32105562 32106236 Gma11g00394 11 3219692 3220474 PCT