Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g00393 ATGGCTGGTTTGGATTTAAGCACGGCTTCACCCTTCGTCCAAAGTCTCCACAGACCAGACTTCAACCAACAACACGATTCCGGAGAAGACGCCAAACAATCAGCAGAAGATGGGCCACATCACCAGGGCGATGTGGTGGGGCGGCGCCCGCGGGGGCGTCCGGCGGGGTCCAAGAACAAGCCGAAGCCGCCGGTCATCATAACGCGGGAGAGCGCCAACACGCTCCGCGCCCACATCCTCGAAGTCGCCAACGGCTGCGACGTCTTCGAAAGCGTAGCCAGCTACGCACGCCGCCGCCAGCGCGGGATCTGTATTCTCAGCGGCAGCGGAACGGTTACGAATGTGAGCCTCCGGCAGCCGGCGTCGGCGGGGGCGGTGGTCACGCTTCACGGCAGGTTCGAGATACTGTCCCTGACGGGATCGTTCCTTCCTCCGCCGGCGCCGCCGGGGGCGACGAGTCTCAGCATATACCTCGCCGGAGGACAGGGGCAGGTGGTGGGTGGGAGTGTGGTCGGAGAGTTGATCGCTGCGGGACCGGTGATTGTGATGGCGGCGTCGTTCACGAACGTGGCCTATGAAAGGTTACCGTTGGAGGAAGAAGAAGAACAGGTTGAGATATCTGGTGTTGCTGGTAATAATAGTAACCCCTTTCCTGATCCTTCTTCGGGACTTCCTTTCTTCAATTTGCCAATGAATGTTCAGTTGCCTGTGGATGCCTGGGCGGGAAACTCAACTACACGTTCACCATTTTGA 753 0.595 MAGLDLSTASPFVQSLHRPDFNQQHDSGEDAKQSAEDGPHHQGDVVGRRPRGRPAGSKNKPKPPVIITRESANTLRAHILEVANGCDVFESVASYARRRQRGICILSGSGTVTNVSLRQPASAGAVVTLHGRFEILSLTGSFLPPPAPPGATSLSIYLAGGQGQVVGGSVVGELIAAGPVIVMAASFTNVAYERLPLEEEEEQVEISGVAGNNSNPFPDPSSGLPFFNLPMNVQLPVDAWAGNSTTRSPF 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g00393 250 MobiDBLite consensus disorder prediction 22 48 - -
Gma11g00393 250 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 23 250 IPR014476 GO:0003680
Gma11g00393 250 Gene3D - 75 210 - -
Gma11g00393 250 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 23 23 250 - -
Gma11g00393 250 ProSiteProfiles PPC domain profile profile. 72 212 IPR005175 -
Gma11g00393 250 MobiDBLite consensus disorder prediction 1 66 - -
Gma11g00393 250 CDD DUF296 76 159 IPR005175 -
Gma11g00393 250 Pfam Plants and Prokaryotes Conserved (PCC) domain 76 189 IPR005175 -
Gma11g00393 250 SUPERFAMILY AF0104/ALDC/Ptd012-like 72 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g00393 Gma-Chr11 3199363 3200610 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g00393 1 250 AT-hook Motif Nuclear Localized (AHL) Family AT4G17800 64.384 2.02e-97 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g00393 - - gmx:100810911 462.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g02017 01 55593451 55594203 Gma11g00393 11 3199363 3200610 GST
Gma11g00393 11 3199363 3200610 Gma17g01422 17 13365245 13366576 PCT
Gma11g00393 11 3199363 3200610 Gma05g01126 05 32193681 32197663 PCT
Gma17g01422 17 13365245 13366576 Gma11g00393 11 3199363 3200610 PCT
Gma05g01126 05 32193681 32197663 Gma11g00393 11 3199363 3200610 PCT