Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g00392 ATGAATTCTCGTGAACAGCCTCAGCCACAACAGCCACCGCAACCACAACCGCCAAACATGACGGTGGGACCCACCATGTACCCTTCGATGTTGTCCCCCGTCACCGCCAGATTCCCATTCAGCAGCAGCAGCAACAACAATCCTCCTCCTTCGGAGCCTCTCAACAACGACACCAACGACAATGATAACAGCGCGTTCGAGGCGTTGAAGCCTTGCGCGCTGGCCGCCTCGGAATCGTCGAAGAAGAAGCGGGGCCGCCCAAGAAAATACTCGCCCGATGGCAACATTGCGTTGGGCCTCGGCCCAACCCATGCTCCCGCTTCCTCCGCCGATCCTCCCGCCAAAAAACATCGCGGTCGCCCCCCTGGTTCCGGCAAGAAGCAGATGGACGCTCTTGGAATTCCTGGAACTGGTTTTACTCCCCATGTTATCACCGCCGAAGTTGGCGAGGATATTGCTGCAAAGCTTGTGGCCTTTTGTGAGCAAGGACCTCGGACAGTTTGCACTCTTTCTGCTAATGGTGCAACCCGCAATGTCACCATTCGAGCACCAGACATGCCCGCGGGTACTGTGGCCTATGAGGGTCCATTTGAAATTATATCACTTAAAGCTGCTACGCTACAATCTGACAATAACAGAATGGCTGCATTGAGTGTGAGTTTAGCAGGTCCTGATGGACGAGTATTGGGTGGTGAAGTTGTTGGAGCCCTTACTGCAGCAACGGCAGTGCAGATCGTTCTGGGTAGCTTTATTGCTGATGGAAAAAAGTCTAGCTCAAGTTACCTGAAATCTGGACGTTCTTTGACACCATCATCCCAGATGTTAGCCTTTGGTGCTTCTCGGACTCCAACTACTCCTACCTCTCAAGGGCCTTCAACTGAGTCATCTGAAGATAATGAGAATAGTCATTTTAGTCAGGGGCCAGGAGGCCCTGGACTATACGATAATAATGCTAGCCAGCCGATTCATACCATGCCGATGTACCAACATCAATTATGGGCTGGCCATACTCAGCAGTGA 1020 0.5235 MNSREQPQPQQPPQPQPPNMTVGPTMYPSMLSPVTARFPFSSSSNNNPPPSEPLNNDTNDNDNSAFEALKPCALAASESSKKKRGRPRKYSPDGNIALGLGPTHAPASSADPPAKKHRGRPPGSGKKQMDALGIPGTGFTPHVITAEVGEDIAAKLVAFCEQGPRTVCTLSANGATRNVTIRAPDMPAGTVAYEGPFEIISLKAATLQSDNNRMAALSVSLAGPDGRVLGGEVVGALTAATAVQIVLGSFIADGKKSSSSYLKSGRSLTPSSQMLAFGASRTPTTPTSQGPSTESSEDNENSHFSQGPGGPGLYDNNASQPIHTMPMYQHQLWAGHTQQ 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g00392 339 Gene3D - 141 263 - -
Gma11g00392 339 MobiDBLite consensus disorder prediction 35 65 - -
Gma11g00392 339 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 47 307 IPR039605 GO:0003680
Gma11g00392 339 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 8 47 307 - -
Gma11g00392 339 MobiDBLite consensus disorder prediction 8 22 - -
Gma11g00392 339 SMART AT_hook_2 115 127 IPR017956 GO:0003677
Gma11g00392 339 SMART AT_hook_2 81 93 IPR017956 GO:0003677
Gma11g00392 339 MobiDBLite consensus disorder prediction 277 321 - -
Gma11g00392 339 CDD DUF296 140 250 IPR005175 -
Gma11g00392 339 ProSiteProfiles PPC domain profile profile. 136 272 IPR005175 -
Gma11g00392 339 Pfam Plants and Prokaryotes Conserved (PCC) domain 141 250 IPR005175 -
Gma11g00392 339 MobiDBLite consensus disorder prediction 1 135 - -
Gma11g00392 339 MobiDBLite consensus disorder prediction 277 306 - -
Gma11g00392 339 SUPERFAMILY AF0104/ALDC/Ptd012-like 138 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g00392 Gma-Chr11 3183029 3187015 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g00392 81 339 AT-hook Motif Nuclear Localized (AHL) Family AT4G17950 43.689 1.86e-67 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g00392 - - gmx:100789687 620.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g02018 01 55611603 55615055 Gma11g00392 11 3183029 3187015 GST
Gma11g00392 11 3183029 3187015 Gma17g01420 17 13342884 13348596 PCT
Gma11g00392 11 3183029 3187015 Gma05g01128 05 32213118 32218221 PCT
Gma17g01420 17 13342884 13348596 Gma11g00392 11 3183029 3187015 PCT
Gma05g01128 05 32213118 32218221 Gma11g00392 11 3183029 3187015 PCT