Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g00389 ATGAAGAATAAAAACAGTCGAGCTAATCGGAAAGCTCGTTCGGTGAAACCCCCCGATTCCTGTTTATCTTCTTCCAATTCAAACAAGAAATGGATGGTTCCCTATAAATTCTACGATGTCAAGGGTCCCAATTCCGAGTCAAACCCTAATGTTGACTCGTCTAGTTGGGTTTTGTGCACCGAGGTTCAATTGGAAACCATTCTGTTGAAAAACATTGAAATTATATACAATGACACTGTGCCAAAGCTTGTTGCTTTGGGCTACAGTGAGGAGATTGCTGTCAAAGCGATTCTGTACAATGGACATTGTTACGGTGCCAATGATTTGGCAACAAACGTGCTGCACAACTCCTTGGCTTGTTTGACAACGGGGACCTTGGACTTGTCTGAGTCCAGCCCTGCGTTCCCTGATATGAAGAAGCTTCAGGAGTACTCTTTGATGAACCTTGTGTCTTTGTTGAAAGAGGTGAGGCCCGATTTAAGTAGGGGTGATGCTATGTGGTGTCTCCTCATGAGCAATTTCCATGTGTTGAAGGCGGGCGCCATCCCGGTTCCTGTTGGAAACACGTGCCCTCCTCCTCCTCCTCCTTTGCCCGAGCTTGAGAACACGGGATGGAGATTTGCGAAAGAGGGAGGCTTGGGTTTTCCTTTGAATGGGCTCTTTTCTGATACTGATATGACTATACGGTTACAGAGAGATATTGAATTCCCAAAAAGATTTGACCTTACTCCTGCCATGAAAAGCTTGTTGAAAAGAAATGTTGCAATGTTTGCTGATGGTTTTAGGGCTAACTCAAAACAGGTGCAGCCGCAAGCCAGTGAATTTCCTAGGACTGGCTCTGTTTCGAAATTGGGTTCTTCATCTGCTTCTGGGACTGCTGCAGTCCTTGGTGAGCAGCCTGGTGACTCTCACAATCAGAATGACCAGGAGGACTTGAACTCTGTGATGAGTAAATTTCTTGATCTAAATATTGATGATAATGTGGAGTTTGTGCCAGAAGACGACAAGGAGGAGGTGATAGTCACTCTAGTTAATCAGATAAAGGATCTTGAGAAACAGGTCAAGGAGCGGAAAGATTGGGCTCATGAGAAGGCAATCCAAGCGGCAAAAAAGCTAAGCAGTGATCTGATTGAGCTGAAAAAGTTCAAGATGGAAAGAGAGGAGAATAAAAAACTGCCGAAGGAGACAGGGGCAGCTGAGGAGCTGGACAACCCAACCATGATGAGACTCTCAGAAATGGAGAATGCCTTGAGAAAGACTAGTGGTCAAATGGACCAAGCAACTGCAGCTGTCAGAAAACTTGAGGCGGAGAAAGCTGAAATCAAAGCAGAGTTAGAGGCTTCTAAATTAAGTGCATCAGAGTCAGTCACAAGCTGTTTGCAAGTTGCAAAAAGGGAGAAAAAGTGCTTAAAGAAGCTTCTGACTTGGGAAAAACAGAAAGTAAAGATACATCAGGATATTTCAGATGAAAAACAGAAGATATTGGAGATACAAGAAGAACTAGCTCAGATTAAACAGTGTGCAAAGGAAACTGAGGTAACGAGGAAGGAAGAGTTGAAGGCTAAGGAAGAAGCCTTGGCACTAATTGAAGAGGAGCGCCGTTCTAAGGAAGCAGCTGAGGCTAATCATAAAAGAAATCTTAAAGCTTTACGCCTGAAGATAGAGATAGATTTCCAGCGTCGTAAGGATGATCTCCTTAGGCTGGAGCAGGAGATTTCACGCCTTAAAGCACCTGCACGGTCTACTACTTTGCCTACAAGTGAGTCTGAGGATGCAGAGCCCCAGAGAGAGACACTTGCTAAGCTTCTGCTAGAGTTAGATAATGTGAAGGATTTTTCTGGAAAAGAAATCAACGGTGATAGAGAATGCATTATATGTGGAAAGGATGAAGTTTCAGTTATTTTCTTGCCATGTGCACACCAAGTTATGTGTGCTCGTTGCGGTAAAGAGTATGGGAAAAAGGGTAAAGCTGTTTGTCCATGCTGCCGGGTTCCAATTGAAGAGAGAATTCCTATATTTGGGGCATGTTCGTAG 2034 0.4405 MKNKNSRANRKARSVKPPDSCLSSSNSNKKWMVPYKFYDVKGPNSESNPNVDSSSWVLCTEVQLETILLKNIEIIYNDTVPKLVALGYSEEIAVKAILYNGHCYGANDLATNVLHNSLACLTTGTLDLSESSPAFPDMKKLQEYSLMNLVSLLKEVRPDLSRGDAMWCLLMSNFHVLKAGAIPVPVGNTCPPPPPPLPELENTGWRFAKEGGLGFPLNGLFSDTDMTIRLQRDIEFPKRFDLTPAMKSLLKRNVAMFADGFRANSKQVQPQASEFPRTGSVSKLGSSSASGTAAVLGEQPGDSHNQNDQEDLNSVMSKFLDLNIDDNVEFVPEDDKEEVIVTLVNQIKDLEKQVKERKDWAHEKAIQAAKKLSSDLIELKKFKMEREENKKLPKETGAAEELDNPTMMRLSEMENALRKTSGQMDQATAAVRKLEAEKAEIKAELEASKLSASESVTSCLQVAKREKKCLKKLLTWEKQKVKIHQDISDEKQKILEIQEELAQIKQCAKETEVTRKEELKAKEEALALIEEERRSKEAAEANHKRNLKALRLKIEIDFQRRKDDLLRLEQEISRLKAPARSTTLPTSESEDAEPQRETLAKLLLELDNVKDFSGKEINGDRECIICGKDEVSVIFLPCAHQVMCARCGKEYGKKGKAVCPCCRVPIEERIPIFGACS 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g00389 677 MobiDBLite consensus disorder prediction 1 25 - -
Gma11g00389 677 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 2 676 - -
Gma11g00389 677 ProSiteProfiles Zinc finger RING-type profile. 623 663 IPR001841 -
Gma11g00389 677 MobiDBLite consensus disorder prediction 266 309 - -
Gma11g00389 677 PANTHER OS05G0141500 PROTEIN 2 676 IPR046934 -
Gma11g00389 677 SUPERFAMILY RING/U-box 615 670 - -
Gma11g00389 677 Pfam Family of unknown function (DUF6592) 71 179 IPR046527 -
Gma11g00389 677 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 610 674 IPR013083 -
Gma11g00389 677 Coils Coil 333 353 - -
Gma11g00389 677 Coils Coil 519 542 - -
Gma11g00389 677 Coils Coil 410 451 - -
Gma11g00389 677 Pfam Zinc finger, C3HC4 type (RING finger) 620 668 - -
Gma11g00389 677 Coils Coil 487 507 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g00389 Gma-Chr11 3161355 3164885 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g00389 623 673 C3H Transcription Factor Family AT1G73950 43.137 1.41e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g00389 - - gmx:100789166 1246.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g00389 11 3161355 3164885 Gma17g01412 17 13250071 13256016 PCT
Gma11g00389 11 3161355 3164885 Gma05g01138 05 32401325 32408962 PCT
Gma17g01412 17 13250071 13256016 Gma11g00389 11 3161355 3164885 PCT
Gma05g01138 05 32401325 32408962 Gma11g00389 11 3161355 3164885 PCT