Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g00376 ATGGTTTGCACTGCCAATGATTTACAAGGATGGAAAGATTTCCCAAAGGGACTTAGAGTTCTTCTGCTTGAAGGAGATAGTAGTTCTGCTGCTGAGATAAGAGAACAACTTGAGGCCATGGACTATAAGGTTTCCACTTTCTACGACGAGAATGAAGCCTTGTCAGCACTCTCAAGTAGTCCTAAAGGCTTCCATGTTGCCATAGTGGAGGTGAGTACAAGCTGTAGCCTTGGAGGTTTCAAATTTCTTGAGAATGCAAAGGACTTGCCTACCATTATGACTTCAAAGGACCAGTGTCTGAACACCATGATGAAGTGCATTGCGCTTGGTGCAGTTGAGTTTCTCAGTAAACCACTCTCTGAGGACAAGCTCAAGAATATTTGGCAGCATGTTGTTCACAAGGCATTTAATTCTGGGGAAAATGTCCTTTCTGAATCACTAAAACCTGTCAAAGAATCTGTAGAATCCATGCTGCAGCTCCAAACAGACATTGGACAAGATAAAAGTAGGATTTCAATTGATTTAGAGAATGTGTCGAGGTTTAGTGATAATGACCATGAGCAGTCTGCTGTATGTGATAAATATCCGGCTCCGTCAACCCCTCAATTAAAGCAGGGGACAAGGTTACTGGATGATGGAGATTGCCATGAGCAGACTAATTGCTCAACAGAAAAAGAAAGTGGGGAACATGATAGGGAATGTAAATCTGTCGAAACTTCATGTGGGAATTTGAATGCCGAAAGTTCTCCTCAGCCAAGGGAACCTGATAAGACTCTGATTAGGGAGGAAGATGATTTTGCCAATGTTTCCAAGGGTGAGAGCGCTGTTTCACTGAATCCACATAATAAAAAGTTTCTCAGCAATGCCGATGGTAATACATCTCCAAATAAAACGGGTGTACTTAATGATTCATGTGAGATTAAAGCTAATCGGAAGAAGGTGAAAGTAGACTGGACACCTGAGCTGCATAAAAAATTTGTAAAGGCTGTCGAACAACTAGGTATTGATCAAGCCATTCCTTCTAGAATATTGGAGATAATGAAAGTGGAAGGTTTGACAAGGCACAATGTGGCAAGCCATCTTCAGAAATATAGAATACACAAGAGACAAAGTGCACCCAGGGAAGAAGATCGGAAATGGCATAATCAAGGGGATGCAATGCAAAGGAACTATTATATGCAAAGACCAATCATGGCATACCCTCCATATCATTCACATCACACCCTTTCTCCAGCTCCTATATATCCTATGTGGGGACAACCTGGCAGTCAAACAGCCGGTGTACAGATTTGGGGCCATCCTGGTTATCCCATGTGGCATCCTACAGAAAGTTGGCACTGGAAGCCTTATCCGGGGGTGCATGTGGATGCTTGGGGATGCCCGTTGGTGCCACCTCCTCAAGCTCCTTGTTTTCCCTACAATCAAAATACACCTGGATTGCACAATCCTAAAGCAGTTGACTATAGATTCAGCATGCCACGAAGTTCCTTTGAGCATCATCCGGCAGAGGAGGTGGTAGACAAGGTAGTGAAGGAAGCAATGAGCCAGCCATGGCTACCATTGCCCTTAGGACTCAAACCTCCTTCCATGGATAGTGTGTTGGCTGAACTCTCCAAACAAGGCATACCCAGCATCCCTCTTGGCAACAAGGGTTCTTCTACTCCTAAACCCCGTCGAGATGTTGCAACTACAGTGGTAGATTTGGCTGGAAGTTGGGACCATTTTACTTTGCCTGGTGGTCCCCGCCGCTACACCGACCACTCATGA 1767 0.4448 MVCTANDLQGWKDFPKGLRVLLLEGDSSSAAEIREQLEAMDYKVSTFYDENEALSALSSSPKGFHVAIVEVSTSCSLGGFKFLENAKDLPTIMTSKDQCLNTMMKCIALGAVEFLSKPLSEDKLKNIWQHVVHKAFNSGENVLSESLKPVKESVESMLQLQTDIGQDKSRISIDLENVSRFSDNDHEQSAVCDKYPAPSTPQLKQGTRLLDDGDCHEQTNCSTEKESGEHDRECKSVETSCGNLNAESSPQPREPDKTLIREEDDFANVSKGESAVSLNPHNKKFLSNADGNTSPNKTGVLNDSCEIKANRKKVKVDWTPELHKKFVKAVEQLGIDQAIPSRILEIMKVEGLTRHNVASHLQKYRIHKRQSAPREEDRKWHNQGDAMQRNYYMQRPIMAYPPYHSHHTLSPAPIYPMWGQPGSQTAGVQIWGHPGYPMWHPTESWHWKPYPGVHVDAWGCPLVPPPQAPCFPYNQNTPGLHNPKAVDYRFSMPRSSFEHHPAEEVVDKVVKEAMSQPWLPLPLGLKPPSMDSVLAELSKQGIPSIPLGNKGSSTPKPRRDVATTVVDLAGSWDHFTLPGGPRRYTDHS 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g00376 588 SUPERFAMILY Homeodomain-like 312 369 IPR009057 -
Gma11g00376 588 MobiDBLite consensus disorder prediction 184 214 - -
Gma11g00376 588 PANTHER TWO-COMPONENT RESPONSE REGULATOR-APRR2-LIKE PROTEIN 1 553 - -
Gma11g00376 588 SMART REC_2 18 128 IPR001789 GO:0000160
Gma11g00376 588 Gene3D - 309 370 - -
Gma11g00376 588 Pfam Myb-like DNA-binding domain 316 365 IPR001005 -
Gma11g00376 588 Pfam Response regulator receiver domain 20 126 IPR001789 GO:0000160
Gma11g00376 588 Gene3D - 18 145 - -
Gma11g00376 588 MobiDBLite consensus disorder prediction 281 300 - -
Gma11g00376 588 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 310 369 IPR017930 -
Gma11g00376 588 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 553 IPR044825 GO:0003700|GO:0045893
Gma11g00376 588 SUPERFAMILY CheY-like 16 140 IPR011006 -
Gma11g00376 588 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 313 368 IPR006447 GO:0003677
Gma11g00376 588 ProSiteProfiles Response regulatory domain profile. 19 132 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g00376 Gma-Chr11 3058196 3063365 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g00376 1 546 Response Regulator Gene Family AT4G18020 48.700 1.59e-141 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Gma11g00376 Response_reg 9.1e-08 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g00376 - - gmx:100784905 1150.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g02037 01 55769647 55774524 Gma11g00376 11 3058196 3063365 GST
Gma11g00376 11 3058196 3063365 Gma17g01397 17 12993611 12999991 PCT
Gma11g00376 11 3058196 3063365 Gma05g00664 05 7385860 7392700 PCT
Gma17g01397 17 12993611 12999991 Gma11g00376 11 3058196 3063365 PCT
Gma05g00664 05 7385860 7392700 Gma11g00376 11 3058196 3063365 PCT