Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g00350 ATGGACGAACGGTACGAGACTTTGAAGGAGCTTGGTTCAGGGAACTTCGGAGTGGCAAGGTTGGCCAAAGACAAGGAGACAGGAGAACTTGTTGCCATCAAATACATAGAAAGGGGAAAAAAGATTGATGCGAATGTTCAAAGGGAGATAGTTAACCACCGATCTTTAAGGCATCCAAATATTATCAGGTTCAAAGAGgtatttctgacccctactcatttagctattgtccttgagtatgctgctggtggcgaactcttcgagaggatatgcaatgctggtcgattgagtgaagatgagGCAAGATTTTTCTTTCAGCAACTAATATCTGGAGTTAGCTATTGTCATTCCATGCAAATATGTCATAGAGATCTGAAATTGGAAAACACTCTACTGGACGGAAATCCAGCTCCTAGACTTAAAATTTGTGACTTTGGTTTCTCCAAGtctgctttgctgcactctcaacctaaatcaactgttggaactcctgcatacattgctccagaagttttgtcgcgaaaggaatatgatggaaaggttgccgatgtttggtcgtgtggtgtgacactttatgtcatgttagttggagcatacccatttgaagatccagaagatcctaaaaatttcagaaagagtattgggAGAATTATGAGTGTTCAATATGCCATACCCGACTACGTACGTGTCTCTAAGGAGTGTAGGCATCTTATATCTCGTATTTTTGTTGCCAATCCTGCCAAGAGGATCAACATCTCGGAGATAAAACAGCACCTTTGGTTTAGGAAGAACTTGCCAAGAGAGATAATTGAGGCTGAAAGAAGGGGTTACGAGGAAACACAAAAGGACCAACCAAGCCAAAGTGTGGAAGAAATCATGCAGATCATTCAAGAAGCAAGGACAAAAATCCACACTGGTGAGCAAGCTGGCACAGGAACTTCGGATGTTGTGCGTGGTGATGAGGCTAATGAGGAAGTTGATATTAATGACCACTTTGCCAAATACCTAACCCTTGATTAA 1020 0.2941 MDERYETLKELGSGNFGVARLAKDKETGELVAIKYIERGKKIDANVQREIVNHRSLRHPNIIRFKEVFLTPTHLAIVLEYAAGGELFERICNAGRLSEDEARFFFQQLISGVSYCHSMQICHRDLKLENTLLDGNPAPRLKICDFGFSKSALLHSQPKSTVGTPAYIAPEVLSRKEYDGKVADVWSCGVTLYVMLVGAYPFEDPEDPKNFRKSIGRIMSVQYAIPDYVRVSKECRHLISRIFVANPAKRINISEIKQHLWFRKNLPREIIEAERRGYEETQKDQPSQSVEEIMQIIQEARTKIHTGEQAGTGTSDVVRGDEANEEVDINDHFAKYLTLD 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g00350 339 Gene3D Transferase(Phosphotransferase) domain 1 81 269 - -
Gma11g00350 339 SMART serkin_6 5 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma11g00350 339 CDD STKc_SnRK2 4 260 - -
Gma11g00350 339 Gene3D Phosphorylase Kinase; domain 1 1 80 - -
Gma11g00350 339 ProSitePatterns Protein kinases ATP-binding region signature. 11 34 IPR017441 GO:0005524
Gma11g00350 339 PANTHER SERINE/THREONINE KINASE 3 332 - -
Gma11g00350 339 Pfam Protein kinase domain 5 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma11g00350 339 ProSiteProfiles Protein kinase domain profile. 5 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma11g00350 339 ProSitePatterns Serine/Threonine protein kinases active-site signature. 120 132 IPR008271 GO:0004672|GO:0006468
Gma11g00350 339 SUPERFAMILY Protein kinase-like (PK-like) 3 273 IPR011009 -
Gma11g00350 339 PANTHER SUCROSE NONFERMENTING 1(SNF1)-RELATED KINASE 3 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g00350 Gma-Chr11 2804109 2807829 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g00350 4 273 CBL-interacting serine-threonine protein kinases AT4G24400 44.484 1.11e-70 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Gma11g00350 Pkinase 7.6e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g00350 K14498 - gmx:547797 682.945
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g00350 11 2804109 2807829 Gma11g00350 11 2804109 2807829 ECH
Gma01g02065 01 56043329 56047137 Gma11g00350 11 2804109 2807829 GST
Gma11g00350 11 2804109 2807829 Gma17g01364 17 12537935 12545869 PCT
Gma11g00350 11 2804109 2807829 Gma05g00624 05 6713410 6717680 PCT
Gma17g01364 17 12537935 12545869 Gma11g00350 11 2804109 2807829 PCT
Gma05g00624 05 6713410 6717680 Gma11g00350 11 2804109 2807829 PCT