Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g00345 ATGGCTTGGATTCTTGATGAGTATTCAAAGTTTCATGGACATTCACCAGCAGTTGTGACTGGGAAGCCTTTTGTTCTTGGAGGTTCATTGGGAAGAGAGGCTCCCACAGGATTGGGAGTGATTTTTGCAACAGAGGCTTTATTTGCTGAATACGAAATGGTCCCCGCTCTGCTGAAACACAAGGAAGGCAATGGAGATTTGAAGGAATTCTCAGGAGCAGATGAATTGCTTGTTCATGAATGTCATGTTCTCATCCCTTGTGATTTGGGAGGAGTTCTCAACAAagcaacttattatggtagcacagattgttatggaaacccaaggggagcttgtggctttggcgaatatggaaaaacggtaaacgatggcagtgtagcaggcgtgtcttggctatggaagaatggatctggctgtggagcatgttatcaggCTAGTgttaggtgcaaaataccccaattctgcgatgagaatggagcatacgtggtggtgacagattatggcgagggagacagaacagacttcataatgagtccacgtgcctactcaagattgggaagtaacgcagatgcatctgcagaactattcaaatacggtgtagtggatgtagaatacagaagggtcccctgtagatacggtggctataacctcttggttaaggttcatgaacagagcagaaaccctcactacttagccattgtcattctctatcttggtggaacctacgacgtaactgctgttgagttgtggcaggaagattgccaagagtggaggcgaatgcgcagggcatttgggacggtgtttgatgctgagaacccgccacggggcgacataaagttgaggtttcaattgggtggtgatgcacagcagtattgggtgcaatccaagaatgttatctctgAATGTTCCTTTGTTGTGAGTGGATCTAGTGCTCTTTGTATTGGGGACTAA 951 0.1546 MAWILDEYSKFHGHSPAVVTGKPFVLGGSLGREAPTGLGVIFATEALFAEYEMVPALLKHKEGNGDLKEFSGADELLVHECHVLIPCDLGGVLNKATYYGSTDCYGNPRGACGFGEYGKTVNDGSVAGVSWLWKNGSGCGACYQASVRCKIPQFCDENGAYVVVTDYGEGDRTDFIMSPRAYSRLGSNADASAELFKYGVVDVEYRRVPCRYGGYNLLVKVHEQSRNPHYLAIVILYLGGTYDVTAVELWQEDCQEWRRMRRAFGTVFDAENPPRGDIKLRFQLGGDAQQYWVQSKNVISECSFVVSGSSALCIGD 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g00345 316 Pfam Lytic transglycolase 126 205 IPR009009 -
Gma11g00345 316 PANTHER EXPANSIN-LIKE B1 91 301 - -
Gma11g00345 316 Gene3D - 211 303 IPR036749 -
Gma11g00345 316 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 229 299 IPR007117 -
Gma11g00345 316 PANTHER EXPANSIN-B3 91 301 - -
Gma11g00345 316 Gene3D - 92 210 IPR036908 -
Gma11g00345 316 PRINTS Expansin/Lol pI family signature 90 105 IPR007118 GO:0005576
Gma11g00345 316 PRINTS Expansin/Lol pI family signature 198 214 IPR007118 GO:0005576
Gma11g00345 316 PRINTS Expansin/Lol pI family signature 129 147 IPR007118 GO:0005576
Gma11g00345 316 PRINTS Expansin/Lol pI family signature 257 271 IPR007118 GO:0005576
Gma11g00345 316 SUPERFAMILY PHL pollen allergen 216 299 IPR036749 -
Gma11g00345 316 Pfam Expansin C-terminal domain 219 299 IPR007117 -
Gma11g00345 316 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 109 215 IPR007112 -
Gma11g00345 316 SUPERFAMILY Barwin-like endoglucanases 93 214 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g00345 Gma-Chr11 2771807 2779819 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g00345 76 299 Expansin Gene Family AT4G17030 59.211 3.76e-95 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g00345 - - gmx:100777427 432.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g00345 11 2771807 2779819 Gma05g00615 05 6494598 6496738 PCT
Gma05g00615 05 6494598 6496738 Gma11g00345 11 2771807 2779819 PCT