Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g00323 ATGACGGTTGAAAAGGAAGATTTGGGTTTGAGTCTAAGCTTGAGCTTCCCTCAGAACCCCCCAACTCATCTTCATCTCAATCTCGTTTCCTCTTCTCCTTCCAGCCACAACCCTCAGAAACCCTCTTGGAACGACCCTTTCACTTCTTCAGGTGTGTCTGGATCATCATTCCTTCGAGGAATCGATGTGAACCGTTTACCTTCTGTGGTCGATTGCGAAGAGGAAGCAGGTGTGTCATCTCCAAACAGCACGGTTTCTAGTGTCAGTGGAAAACGTAGCGAGAGGGAAGAAGCCAATGGTGAAGAAAACGACACAGACAGAGCTTGTTCCAGAGGCATCATCAGCGACGAAGAAGATGCCGAAACCTCTAGAAAGAAACTTAGACTCTCCAAAGACCAATCAATTATCCTCGAAGAGAGCTTCAAAGAACACAACACTCTCAACCCCAAACAAAAGTTGGCGCTGGCGAAACAGCTGGGTCTTCGAGCGAGACAAGTGGAGGTGTGGTTCCAGAACAGAAGGGCAAGGACCAAGCTGAAGCAAACGGAAGTTGACTGTGAGTTTTTGAAAAGGTGCTGCGAGAATCTGACCGTGGAGAACAGGAGGTTGCAGAAGGAAGTGCAAGAGCTTAGAGCACTGAAACTTTCCCCGCAGTTCTACATGCACATGACCCCACCCACCACTCTCACCATGTGCCCCTCGTGTGAGCGTGTCGCGGTTCCCCCCTCCTCCGCCGTTGATCCTGCCATGCGTCACCATCACGTGCCTCCTACACAACCTCGGGCCTTCCCCATTGGCCCATGGGCCACCGCTGCCGCCACTATCCCGCACAGGCCCTTCGATGCCCTCCGTCGCAGATCTTGA 864 0.522 MTVEKEDLGLSLSLSFPQNPPTHLHLNLVSSSPSSHNPQKPSWNDPFTSSGVSGSSFLRGIDVNRLPSVVDCEEEAGVSSPNSTVSSVSGKRSEREEANGEENDTDRACSRGIISDEEDAETSRKKLRLSKDQSIILEESFKEHNTLNPKQKLALAKQLGLRARQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTVENRRLQKEVQELRALKLSPQFYMHMTPPTTLTMCPSCERVAVPPSSAVDPAMRHHHVPPTQPRAFPIGPWATAAATIPHRPFDALRRRS 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g00323 287 Pfam HD-ZIP protein N terminus 3 96 IPR006712 GO:0005634
Gma11g00323 287 ProSitePatterns 'Homeobox' domain signature. 155 178 IPR017970 GO:0000981|GO:0006355
Gma11g00323 287 MobiDBLite consensus disorder prediction 90 127 - -
Gma11g00323 287 Pfam Homeobox associated leucine zipper 180 214 IPR003106 GO:0006355|GO:0043565
Gma11g00323 287 Coils Coil 186 213 - -
Gma11g00323 287 MobiDBLite consensus disorder prediction 1 48 - -
Gma11g00323 287 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 2 277 - -
Gma11g00323 287 SMART halz 180 223 IPR003106 GO:0006355|GO:0043565
Gma11g00323 287 MobiDBLite consensus disorder prediction 12 48 - -
Gma11g00323 287 ProSiteProfiles 'Homeobox' domain profile. 120 180 IPR001356 GO:0003677
Gma11g00323 287 Gene3D - 128 178 - -
Gma11g00323 287 PANTHER - 2 277 - -
Gma11g00323 287 SUPERFAMILY Homeodomain-like 118 181 IPR009057 -
Gma11g00323 287 CDD homeodomain 124 181 IPR001356 GO:0003677
Gma11g00323 287 PRINTS Lambda-repressor HTH signature 160 176 IPR000047 GO:0003677
Gma11g00323 287 PRINTS Lambda-repressor HTH signature 151 160 IPR000047 GO:0003677
Gma11g00323 287 MobiDBLite consensus disorder prediction 72 127 - -
Gma11g00323 287 Pfam Homeodomain 124 178 IPR001356 GO:0003677
Gma11g00323 287 SMART HOX_1 122 184 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g00323 Gma-Chr11 2612936 2614780 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g00323 1 287 Homeobox Transcription Factor Family AT5G47370 61.873 3.90e-111 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gma11g00323 HD-ZIP_N 2.9e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g00323 K09338 - gmx:100783851 562.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g00323 11 2612936 2614780 Gma17g01334 17 12059794 12061878 PCT
Gma11g00323 11 2612936 2614780 Gma05g00590 05 5985468 5987087 PCT
Gma17g01334 17 12059794 12061878 Gma11g00323 11 2612936 2614780 PCT
Gma05g00590 05 5985468 5987087 Gma11g00323 11 2612936 2614780 PCT