Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g00317 ATGGGTGCCTACAAGTATGTTTCAGAGCTATGGCGCAAGAAGCAGTCTGATGTCATGCGCTTCTTGCAGCGGGTGAGGTGCTGGGAGTATAGGCAGCAACCTTCCATTGTTCGCTTGACAAGGTCGACCCGCCCTGACAAGGCTCGTCGCTTGGGCTTCAAGGCTAAGCAGGGCTATGTGATATACCGTGTTCGTGTTAGGAGGGGTGGCCGAAAGAGGCCAGTTCCCAAAGGTATTGTTTATGGGAAGCCCACAAACCAGGGTGTTACCCAACTGAAATTTCAGCGTAGCAAGAGGTCAGTTGCTGAGGAGCGAGCTGGACGGAAGCTGGGTGGACTTAGGGTCCTCAATTCTTACTGGGTGAATGAGGACTCTACTTATAAATACTTTGAGGTGATTCTGGTGGATGTGGCTCATGCTGCTATTAGAAATGATCCCAGAATCAATTGGCTCGCCAATCCAGTGCACAAGCACAGAGAGCTGCGTGGGCTCACCTCTGCTGGGAAAAGCAACAGGGGTTTACGTGGCAGAGGACATCTGTACCACAAAGCACGTCCATCTCGCAGGGCAACCTGGAAGAGAAACAACACCCTGTCTCTCCGCCGTTACCGCTAA 615 0.522 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLTRSTRPDKARRLGFKAKQGYVIYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWVNEDSTYKYFEVILVDVAHAAIRNDPRINWLANPVHKHRELRGLTSAGKSNRGLRGRGHLYHKARPSRRATWKRNNTLSLRRYR 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g00317 204 Pfam Ribosomal L15 2 190 IPR000439 GO:0003735|GO:0005840|GO:0006412
Gma11g00317 204 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 1 195 IPR012678 GO:0003735|GO:0005840|GO:0006412
Gma11g00317 204 PANTHER RIBOSOMAL PROTEIN L15 1 204 IPR000439 GO:0003735|GO:0005840|GO:0006412
Gma11g00317 204 SMART Ribosomal_L15e_2 2 193 IPR000439 GO:0003735|GO:0005840|GO:0006412
Gma11g00317 204 Gene3D Ribosomal protein l15e 1 204 IPR024794 GO:0003735|GO:0005840
Gma11g00317 204 PANTHER RIBOSOMAL PROTEIN L15 1 204 - -
Gma11g00317 204 ProSitePatterns Ribosomal protein L15e signature. 46 69 IPR020925 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g00317 Gma-Chr11 2553842 2556678 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g00317 1 204 Cytoplasmic Ribosomal Protein Gene Family AT4G16720 89.216 2.75e-124 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g00317 K02877 - gmx:100305473 406.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g00317 11 2553842 2556678 Gma17g01318 17 11860212 11862783 PCT
Gma11g00317 11 2553842 2556678 Gma05g00579 05 5765389 5768021 PCT
Gma17g01318 17 11860212 11862783 Gma11g00317 11 2553842 2556678 PCT
Gma05g00579 05 5765389 5768021 Gma11g00317 11 2553842 2556678 PCT