Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g00303 ATGGAGCGGCACAAATGCAAGCTCTGCTCCCGAACATTCTCCAATGGCAGAGCCCTCGGTGGCCACATGAAGGCTCACTTAGCCACCCTCCCTCTTCCCCCCAAGCCACCACTTTCTCCCTCTGCTGCTTCCTTCTCTTCTAATTCCTCTTCAGAAGAAGCCACACACGATGAAAAGTCTCTGATTTATGGGTTAAGAGAGAATCCCAAGAAATGCTTCCGACTCGCAGATCCCGAGTTTAACATGGCCTCTGTGGTTCAAGACAGGGAAAGCGAGACGGAGTCAAAGAACCCAACTCGCCGACGATCCGAGCGGACCCGAAGAACCGTGAATTCTGAACTAAAAAAGGCCAAACTCAGTTTCATGGAGTCGCCAGAGCCCGTGAGCTCTGTCTCCGACACTTCTCCCGAGGAAGATGTCGCCATGTGTCTCATGATGTTGTCGAGAGACCGATGGAGTAAAAACAACAACAACAACATCATCATCATTAACAACGTTGTTAGTAATGATGATGTTGTCGAAGAAGAAGAAGAGGGTGGGAGATCAGTAGAGATCAAGTTGAGGAGAGTTCGCGGGAAGCACAAGTGTCAGAGCTGCGGGAAGACGTTTCGATCTTCACGCGCATTGGGCGGTCACAGAAGCATTTGCGAAGGTTCAGGTAACGATAGTAAAACCTTCCAATGCCCTTTTTGTTCCAAGGTGTTTGGGTCTGGTCAAGCACTCGGTGGCCACAAGAGATCTCACCTCATGCCTTCTTCGTCTTCGACCGCTAACAATGATTCTTTTAGATTGAAAGAGAGCTTCATAGATCTCAACTTGCCAGCTCCGGCCGAAGATGACGACCTTAGTGTTGTTTCTGATGCTTAA 867 0.4925 MERHKCKLCSRTFSNGRALGGHMKAHLATLPLPPKPPLSPSAASFSSNSSSEEATHDEKSLIYGLRENPKKCFRLADPEFNMASVVQDRESETESKNPTRRRSERTRRTVNSELKKAKLSFMESPEPVSSVSDTSPEEDVAMCLMMLSRDRWSKNNNNNIIIINNVVSNDDVVEEEEEGGRSVEIKLRRVRGKHKCQSCGKTFRSSRALGGHRSICEGSGNDSKTFQCPFCSKVFGSGQALGGHKRSHLMPSSSSTANNDSFRLKESFIDLNLPAPAEDDDLSVVSDA 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g00303 288 MobiDBLite consensus disorder prediction 84 110 - -
Gma11g00303 288 Pfam C2H2-type zinc finger 3 28 - -
Gma11g00303 288 Pfam C2H2-type zinc finger 194 213 - -
Gma11g00303 288 Pfam C2H2-type zinc finger 226 249 - -
Gma11g00303 288 ProSitePatterns Zinc finger C2H2 type domain signature. 228 248 IPR013087 -
Gma11g00303 288 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Gma11g00303 288 Gene3D Classic Zinc Finger 191 248 - -
Gma11g00303 288 ProSiteProfiles Zinc finger C2H2 type domain profile. 194 223 IPR013087 -
Gma11g00303 288 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Gma11g00303 288 ProSiteProfiles Zinc finger C2H2 type domain profile. 226 253 IPR013087 -
Gma11g00303 288 SUPERFAMILY beta-beta-alpha zinc fingers 3 29 IPR036236 -
Gma11g00303 288 SMART c2h2final6 4 26 IPR013087 -
Gma11g00303 288 SMART c2h2final6 226 248 IPR013087 -
Gma11g00303 288 SMART c2h2final6 194 214 IPR013087 -
Gma11g00303 288 MobiDBLite consensus disorder prediction 28 58 - -
Gma11g00303 288 MobiDBLite consensus disorder prediction 89 110 - -
Gma11g00303 288 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 288 - -
Gma11g00303 288 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 288 IPR044303 GO:0006355
Gma11g00303 288 SUPERFAMILY beta-beta-alpha zinc fingers 194 248 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g00303 Gma-Chr11 2448415 2449281 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g00303 1 285 C2H2 Transcription Factor Family AT3G60580 37.383 1.24e-48 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma11g00303 zf-C2H2_6 9.1e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g00303 - - gmx:100811637 474.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g00303 11 2448415 2449281 Gma17g01311 17 11785559 11786567 PCT
Gma11g00303 11 2448415 2449281 Gma05g00565 05 5600638 5601435 PCT
Gma17g01311 17 11785559 11786567 Gma11g00303 11 2448415 2449281 PCT
Gma05g00565 05 5600638 5601435 Gma11g00303 11 2448415 2449281 PCT