Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g00297 ATGGATGAACCGAACGAAGCACAAGACCACCGAGAACTCTACGCACTCTTGAACTTGTCTCCAGAAGCTTCCGATGAAGAAATTCGCAGAGCGTATCGTCAATGGGCGCAAGTCTATCATCCCGATAAATACCAAGCTCCTCACATGAAGGATATTGCTACGGAGAACTTTCAGCGAATATGCGAAGCGTATGAGATTCTCTCAGATCCAAACAAAAGGCAAATATATGATATCTACGGCATGGAAGCTGAAGAGATCAAGGCAGAGCTCGAGAGATTGAAGAGGATGAAGGAACGGGAGAAAGTGGCGGCGCATTTTCAATCCTCCGGTACAATTCTGGCCAATATGTCTTTGCCACGCTATCTAAATGGAAATGGCCTACTCAGAGGAATGGCTATGACAAGTGAAATCCAGTCTCAGTTATCAAAGCACAATGCTGTTACGATTGGAGGTAATTTAGCAGTGAATGGAGATGAAGGTGGTGGAGCTGCTACTGCTGTGTTTAGGCATCAACTTTCAGAAGTTTCGTCAGTAGAGGTTGTGGCCTCGGCTGGTCTGCGTGCACTAATCGGGGTGCAAACAACTCGCAATCTATCATCACACTCAGCTGCAACAATGGGAATAGCAATGTCTCTGAAAGATGGTTCATTGAATCTTTCAAATTTATGGACCCGCCAACTGTCAGAAACAGCAAGTGGACATATAGAGCTTACTTTGGGACCACATTCATCTGTAACTGTTGGGTGGCAAAAGAAAGAGCGGAGAAGGTCGGCCTCTGGAGAAGTGAAGTTTGGCACAGGTTCTTTTGAGACATCAGTTCATTATACTCATCGTTTTTCTCCTAAATCTCTTGGTTGCATTGTGGGAAGAGTTGGGAGTTCTTCCCTTGAGGTTGAAGTTGGTGGTGGGAGGAAGTTATCCAAATTCAGCTCGGTACGCTGGTTGTATATAATAGGAATTCAGGGTATTTCCTGGAAATTTGAACTCTATCGTGGGGGTCAGAAGTTAATTATTCCTATTTTGCTGACAAGGAATCTGAACCCCATGTTTGCTACTGGAGCATTTGTCGTTCCTGCATCTCTTTACTTTGTTCTAAAGAAACTTTTTATTAAACCTTATTACCTTAGAAGGAATAAGCAGAAGGCTCTGGAGGAGGAGGAGAAAACTTCTGCTCAGGTTAAGGAAGCAAGGGCTGCAGCAGAGAAAGCTCAGAAATTACAACAAACTGTGGCTAATAGGAAAAGAAACAAGCAATTAGAAACAGGTGGACTGGTTATTATGAGAGCACTTTATGGAAATCAGAGAATTGTGAACAACTTAAAGTCATCAAGTGAAACAAGTTTTGAATCAACGTCAGAAGTCATTGATGTTACAATACCTTTGAATTTTCTAGTTAATGATTCTGGCCAACTCAAGCTTCATGAAGGTGTAAAAAAATCAGGCATCATGGGTTTCTGTGATCCATATCCTGGAAGTCCTAAAGAGTTGTATGTAGAGTACGTTTATGCTGGCAATCAATACAAGGTTTGGGCTGGGGATTATGAAGAATTACAGATCCCTCAGGGCAGCCACAGGATATAA 1581 0.4269 MDEPNEAQDHRELYALLNLSPEASDEEIRRAYRQWAQVYHPDKYQAPHMKDIATENFQRICEAYEILSDPNKRQIYDIYGMEAEEIKAELERLKRMKEREKVAAHFQSSGTILANMSLPRYLNGNGLLRGMAMTSEIQSQLSKHNAVTIGGNLAVNGDEGGGAATAVFRHQLSEVSSVEVVASAGLRALIGVQTTRNLSSHSAATMGIAMSLKDGSLNLSNLWTRQLSETASGHIELTLGPHSSVTVGWQKKERRRSASGEVKFGTGSFETSVHYTHRFSPKSLGCIVGRVGSSSLEVEVGGGRKLSKFSSVRWLYIIGIQGISWKFELYRGGQKLIIPILLTRNLNPMFATGAFVVPASLYFVLKKLFIKPYYLRRNKQKALEEEEKTSAQVKEARAAAEKAQKLQQTVANRKRNKQLETGGLVIMRALYGNQRIVNNLKSSSETSFESTSEVIDVTIPLNFLVNDSGQLKLHEGVKKSGIMGFCDPYPGSPKELYVEYVYAGNQYKVWAGDYEELQIPQGSHRI 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g00297 526 Pfam DnaJ-like protein C11, C-terminal 372 520 IPR024586 -
Gma11g00297 526 Gene3D DnaJ domain 3 103 IPR036869 -
Gma11g00297 526 SMART dnaj_3 11 72 IPR001623 -
Gma11g00297 526 PANTHER CHAPERONE PROTEIN DNAJ 13 1 526 IPR042162 -
Gma11g00297 526 Coils Coil 76 103 - -
Gma11g00297 526 PRINTS DnaJ domain signature 14 32 IPR001623 -
Gma11g00297 526 PRINTS DnaJ domain signature 32 47 IPR001623 -
Gma11g00297 526 PRINTS DnaJ domain signature 52 72 IPR001623 -
Gma11g00297 526 PRINTS DnaJ domain signature 72 91 IPR001623 -
Gma11g00297 526 SUPERFAMILY Chaperone J-domain 9 81 IPR036869 -
Gma11g00297 526 Pfam DnaJ domain 13 77 IPR001623 -
Gma11g00297 526 ProSitePatterns Nt-dnaJ domain signature. 57 76 IPR018253 -
Gma11g00297 526 CDD DnaJ 12 69 IPR001623 -
Gma11g00297 526 ProSiteProfiles dnaJ domain profile. 12 80 IPR001623 -
Gma11g00297 526 Coils Coil 376 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g00297 Gma-Chr11 2393455 2401896 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g00297 14 79 C2H2 Transcription Factor Family AT1G74250 44.118 4.09e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g00297 K09531 - gmx:100817782 936.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g00297 11 2393455 2401896 Gma11g00297 11 2393455 2401896 ECH
Gma01g02113 01 56469443 56478574 Gma11g00297 11 2393455 2401896 GST