Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g00272 ATGGCATCCACAGCGTCGCCGATGACGGTTCAGGCGGGTCGGGTTCGGACCCTGAAAGAAGGTTCTCGCGGAGAATCGGGTTTGGGTCCGGTCGTGTACTGGATGTTCAGAGACCAACGTGTGACAGACAATTGGGCTCTGATCCACGCTGTTGCTGAGGCCAACAAAGCCAACGTTCCCGTTGCCGTTGTTTTCAATCTCTTCCACACCTTTCTTGGCGCCAAATCCCGTCATTTAGGGTTCATGCTCAGGGGCTTGCGCCAATTGTGCCACCGTATGCAACACTCTCTTCAAATCCCCTTTTTCTTGTTCCAGGGAGAGGCAGAGGAGACAGTGCCAAAGTTTCTTAGAGAATGTGGAGCTTCACTTTTGGTGACGGATTTCTCACCTTTGCGGGAAGTACGGAGGTGTAAAGAAGAGATATGCAAGAGGGTAAGCGATTCGGTTGCTGTGCATGAAGTGGATGCTCACAACGTTGTGCCCCTTTGGGTTGCCTCTGATAAATTGGAGTACAGTGCTAGGACCATCAGGGCGAAGATAACCAAAAGGCTTTCTGACTATCTCGTTGATTTCCCTGACATTGAAGTTGAGCCACCAGCTGGGAAGTGGGTGGCTACTGAGAACCATTCCATTGACTGGGATGATCTCATTGCTGATGTGTTAAGGAGAGGAGCAGAGGTTCCTGAAGTTGATTGGTGTGAGCCAGGGGAAATTGCCGCAAGTGAAGTATTAATGGGAAGTAAAAATGGATTCTTGACTAAAAGGTTGAAAGGTTATTCCCTGGACCGCAACAACCCGTGCCACCCCAATGCGCTTTCTGGCTTATCTCCCTATTTGCACTTTGGACAGATATCTGCTCAGCGATGTGCTTTAGAAGCACGTAAGCGGCGAAATTCACATCCTCAAGCAATTGATGCTTTCTTGGAGGAGTTGATTGTGCGGAGAGAGCTTGCTGATAACTATTGCTTCTACCAGCCTCATTATGATTCATTAAAAGGAGCATGGGCATGGGCTCAGAACACCTTAACTGAACATGCCACTGATAAGCGAGAACATATTTACACGAAGGAGCAGTTGGAGAAGGCACAGACAGCTGATCCTCTCTGGAATGCTTCTCAGCTGGAGATGGTTCACTATGGGAAAATGCATGGTTTTATGAGAATGTATTGGGCAAAGAAGATACTTGAGTGGACACGAGGACCTGAAGAAGCCCTTGAGATATCTTTGTATTTAAATGACAAGTATGAATTAGATGGGAGAGATCCAAATGGTTATGTTGGCTGCATGTGGTCAATATGTGGGGTTCATGATCAGGGTTGGAAAGAGCGGCCCATTTTTGGGAAAATTCGATACATGAACTATGCAGGCTGCAAAAGAAAATTTGATGTCGATAAATACATTGCATATGTCAATAAATTAGTTCGTGAGCTCAAAAAGAGGAAGGCTGAAAACTTGCTATCTCAAAAGGAGAAAGTAGTTCGCAGTTGTGATCCTGAAGATTGA 1503 0.4651 MASTASPMTVQAGRVRTLKEGSRGESGLGPVVYWMFRDQRVTDNWALIHAVAEANKANVPVAVVFNLFHTFLGAKSRHLGFMLRGLRQLCHRMQHSLQIPFFLFQGEAEETVPKFLRECGASLLVTDFSPLREVRRCKEEICKRVSDSVAVHEVDAHNVVPLWVASDKLEYSARTIRAKITKRLSDYLVDFPDIEVEPPAGKWVATENHSIDWDDLIADVLRRGAEVPEVDWCEPGEIAASEVLMGSKNGFLTKRLKGYSLDRNNPCHPNALSGLSPYLHFGQISAQRCALEARKRRNSHPQAIDAFLEELIVRRELADNYCFYQPHYDSLKGAWAWAQNTLTEHATDKREHIYTKEQLEKAQTADPLWNASQLEMVHYGKMHGFMRMYWAKKILEWTRGPEEALEISLYLNDKYELDGRDPNGYVGCMWSICGVHDQGWKERPIFGKIRYMNYAGCKRKFDVDKYIAYVNKLVRELKKRKAENLLSQKEKVVRSCDPED 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g00272 500 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 30 214 IPR036155 -
Gma11g00272 500 ProSitePatterns DNA photolyases class 2 signature 2. 434 453 IPR032673 -
Gma11g00272 500 Gene3D - 157 330 - -
Gma11g00272 500 TIGRFAM phr2: deoxyribodipyrimidine photolyase 9 469 IPR008148 GO:0003904|GO:0006281
Gma11g00272 500 Pfam DNA photolyase 31 192 IPR006050 -
Gma11g00272 500 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 331 481 - -
Gma11g00272 500 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 223 482 IPR036134 -
Gma11g00272 500 Gene3D HUPs 8 156 IPR014729 -
Gma11g00272 500 PANTHER DEOXYRIBODIPYRIMIDINE PHOTOLYASE 8 495 - -
Gma11g00272 500 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 29 162 IPR006050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g00272 Gma-Chr11 2157051 2160792 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g00272 K01669 - gmx:100170749 1037.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g02134 01 56689493 56691891 Gma11g00272 11 2157051 2160792 GST
Gma01g00208 01 2286874 2292557 Gma11g00272 11 2157051 2160792 GST