Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g00246 ATGCAAGAAGCAGGCTTGGGAATGATGGGTGAGGTCTCCGGCGATCAGCACCGTCAGCTGAAGGCGGAGATAGCGACTCATCCGCTGTACGAGCAGCTTCTGGCAGCACACGTGGCATGCCTCCGTGTGGCGACTCCCATCGATCAGCTTCCACTCATTGATGCTCAATTATCTCAGTCTCACCATCTTCTACGCTCTTATGTCTCACACAACACTCTTTCTCTCTCCCCTCATCACCGCCAAGAACTTGACAACTTCCTGGCACAATATTTGATAGTTTTGTGTACATTTAAAGAACAGCTTCAGCAACATGTCAGAGTCCACGCCGTCGAGGCTGTCATGGCCTGCCGTGATATCGAAAATACCTTACAAGCTCTCACTGGAGTGAGTTTGGGAGAAGGAACTGGTGCAACAATGTCAGATGACGAAGATGATTTACAGATGGATTTTTCTTTAGATCAATCTAGCGCTGAAGGGCATGACATGATGGGATTTGGTCTTCCTACAGAATCTGAAAGGTCATTGATGGAAAGAGTTCGCCAGGAACTAAAGATTGAGCTGAAACAGGGTTTCAAGTCAAGAATTGAAGATGTCAGGGAAGAAATATTAAGGAAACGTAGAGCTGGGAAATTGCCAGGTGACACAACTTCTGTGTTGAAGAACTGGTGGCAGCAACATGCAAAGTGGCCTTACCCAACTGAAGATGACAAGGCAAAACTTGTGGAGGAGACAGGGTTGCAGCTGAAGCAAATTAATAATTGGTTCATCAACCAAAGGAAACGTAACTGGCACAGCAACTCTCAATCGGTTACTTCTTTAAAGTCCAAACGCAAGAGGTAG 840 0.4643 MQEAGLGMMGEVSGDQHRQLKAEIATHPLYEQLLAAHVACLRVATPIDQLPLIDAQLSQSHHLLRSYVSHNTLSLSPHHRQELDNFLAQYLIVLCTFKEQLQQHVRVHAVEAVMACRDIENTLQALTGVSLGEGTGATMSDDEDDLQMDFSLDQSSAEGHDMMGFGLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHAKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKR 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g00246 279 SMART KNOX1_2 18 62 IPR005540 GO:0003677|GO:0005634
Gma11g00246 279 SMART HOX_1 204 269 IPR001356 GO:0003677
Gma11g00246 279 SUPERFAMILY Homeodomain-like 204 269 IPR009057 -
Gma11g00246 279 Pfam Homeobox KN domain 222 261 IPR008422 GO:0003677|GO:0006355
Gma11g00246 279 Pfam KNOX1 domain 20 61 IPR005540 GO:0003677|GO:0005634
Gma11g00246 279 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 4 279 - -
Gma11g00246 279 Pfam KNOX2 domain 77 127 IPR005541 GO:0003677|GO:0005634
Gma11g00246 279 ProSiteProfiles ELK domain profile. 182 202 IPR005539 GO:0003677
Gma11g00246 279 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 7 4 279 - -
Gma11g00246 279 ProSiteProfiles 'Homeobox' domain profile. 202 265 IPR001356 GO:0003677
Gma11g00246 279 SMART KNOX2_2 73 128 IPR005541 GO:0003677|GO:0005634
Gma11g00246 279 CDD homeodomain 205 266 IPR001356 GO:0003677
Gma11g00246 279 Gene3D - 201 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g00246 Gma-Chr11 1966141 1972258 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g00246 1 278 Homeobox Transcription Factor Family AT1G62990 79.522 2.17e-170 471
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Gma11g00246 KNOX2 4.3e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g00246 - - gmx:100787023 562.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g00246 11 1966141 1972258 Gma11g00246 11 1966141 1972258 ECH
Gma01g02159 01 56880966 56887718 Gma11g00246 11 1966141 1972258 GST
Gma17g01232 17 10863166 10868714 Gma11g00246 11 1966141 1972258 PCT
Gma05g00479 05 4545932 4551950 Gma11g00246 11 1966141 1972258 PCT