Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g00218 ATGGATGGGAGAGAAGGCATGGCATTTCCTGGTGGCTCTGCTCCATATTACATGCAGCATAGAGGAGGAGGGGTTGGTGGGTCTGTTCCAGGAACCGGGACACAGAGTGGAGGGTTTCAACCACCCTCTGGCTTTAGAGCTTTGTCAAATGTCTCTCCAGGTTCTGCATTTAAAGTAGAGTCTCAGCCTCAACATGCTAGTTTTAGTCATGGCATTAACACAGGTTCCTCTCCTGATGGTGGAAGTGGAGTGCCTTCTTCTGGTGAGCCTGTGAAGAAGAAAAGAGGGAGGCCTAGGAAGTATGGCCCTGATGGATCTGTTTCCTTGATGCTCTCTCCCATGTCTGCCACTGCTAATTCCACCCCGGGATCGGGCACTTCTTCGGAGAAACGACCCAGGGGGCGCCCACCTGGAAGTGGAAGGAAGCAACAGCTTGCCACTCTAGGTGAATGGATGAACAATTCTGCAGGACTGGCCTTTTCACCTCATGTTATCACCGTTGGAGTTGGGGAGGACATTGTAGCAAAGTTATTGTCATTTGCAAGGCAGAGACCAAGGGCTGTGTGCATCTTAACAGGAACTGGGACAATTTCTTCAGTCACTCTGCGCCAACCCGCTTCTACTAGCATCAGTGTTACATATGAGGGCCGATTTCAAATATTATGCTTGTCTGGTTCTTACTTGGTTGCTGAAGAAGGTGGACCTCACAATAGAACGGGTGGCATGAGTGTTTCCCTTTCTAGTCCTGATGGTCATATCATTGGTGGTGGTGTTACTAGGCTTGTTGCTGCAAGCCCAGTGCAGGTGGTAGCATGCAGTTTCGTATATGGGGGCTCCAAGCCAAAGACTAAAGAAGTGACCACTACCACTACTACTACAAAAGATAGCAGTTCAGAGCCTCAGAGTAGTGATAAGTTAGCGTCTCCAGCCAGTGCTCCTCCACCTAATCAAAACTACACCTCTTCTTCTCCGTCCCCAGGCATTTGGCCTGCATCGTCAAGGCCAGTAGAGGTTAAAAGTGCACATCCACATACTGGTATTGACTTGACGCGTGGGTGA 1059 0.4967 MDGREGMAFPGGSAPYYMQHRGGGVGGSVPGTGTQSGGFQPPSGFRALSNVSPGSAFKVESQPQHASFSHGINTGSSPDGGSGVPSSGEPVKKKRGRPRKYGPDGSVSLMLSPMSATANSTPGSGTSSEKRPRGRPPGSGRKQQLATLGEWMNNSAGLAFSPHVITVGVGEDIVAKLLSFARQRPRAVCILTGTGTISSVTLRQPASTSISVTYEGRFQILCLSGSYLVAEEGGPHNRTGGMSVSLSSPDGHIIGGGVTRLVAASPVQVVACSFVYGGSKPKTKEVTTTTTTTKDSSSEPQSSDKLASPASAPPPNQNYTSSSPSPGIWPASSRPVEVKSAHPHTGIDLTRG 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g00218 352 Pfam Plants and Prokaryotes Conserved (PCC) domain 162 275 IPR005175 -
Gma11g00218 352 CDD DUF296 162 274 IPR005175 -
Gma11g00218 352 SUPERFAMILY AF0104/ALDC/Ptd012-like 160 276 - -
Gma11g00218 352 ProSiteProfiles PPC domain profile profile. 157 295 IPR005175 -
Gma11g00218 352 MobiDBLite consensus disorder prediction 1 143 - -
Gma11g00218 352 MobiDBLite consensus disorder prediction 282 352 - -
Gma11g00218 352 PRINTS AT-hook-like domain signature 92 102 IPR017956 GO:0003677
Gma11g00218 352 PRINTS AT-hook-like domain signature 128 139 IPR017956 GO:0003677
Gma11g00218 352 MobiDBLite consensus disorder prediction 29 83 - -
Gma11g00218 352 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 352 IPR039605 GO:0003680
Gma11g00218 352 MobiDBLite consensus disorder prediction 110 128 - -
Gma11g00218 352 Gene3D - 162 293 - -
Gma11g00218 352 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 1 352 - -
Gma11g00218 352 MobiDBLite consensus disorder prediction 282 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g00218 Gma-Chr11 1735143 1740146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g00218 1 352 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 50.131 5.80e-101 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g00218 - - gmx:100790569 624.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g00218 11 1735143 1740146 Gma11g00218 11 1735143 1740146 ECH
Gma01g02198 01 57215903 57220322 Gma11g00218 11 1735143 1740146 GST
Gma11g00218 11 1735143 1740146 Gma05g02029 05 41565178 41567935 PCT
Gma11g00218 11 1735143 1740146 Gma08g00133 08 1108622 1112865 PCT