Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g00216 ATGGGGAAAGGAAAACCTAGGGCTGTTGAGAAAGGTGTGGTAGGACCTAGTTTGAGTGTTACATCCTCGACTATACCTTCGGGGCCTGTGTATTACCCCACTGAGGATGAATTCAAGGATCCTTTGGAGTATATTTACAAGATTAGACCCGAGGCTGAACCTTTTGGGATTTGTAAGATTGTGCCTCCAAAGACTTGGAAACCCCCTTTTGCTTTGGATCTAGACACTTTTACTTTCCCTACCAAGACTCAGGCCATTCACAAGCTCCAGGCTCGCCCTGCCGCCTGTGACTCCAAGACATTTGACTTGGACTACTCCAGGTTTCTGAGGGACCACTCTGGTAAGAAGTCCAGGAAGAGGGTTGTGTTTGAGGGCGAGGAGCTCGACTTGTGTATGCTATTCAATGCCGTGAAACGGTTTGGCGGATATGATAAGGTTGTTGATGGGAAGAAATGGGGGGATGTTGCTCGCTTTGTGAGGTCCAGCGGGAAGATTTCGGATTGTGCTAAGCATGTGTTGTGTCAGTTGTACCGGGAGCATTTGTGTGATTATGAGAATTTTTATAACCGGATGAATCAAGGGACGGCTCAGAGTTGTAAGAAAGCTGTGCATGATGACCACAAGAGTGATCATGGGGTGCAATCTGTGGTATCCAAGAAGAATCACAAGAGTGTTGATGGTTCAAACCATAAGGATAGTAAGGTGCAAGAAGAAGAGCATGATCAGATTTGTGAGCAATGTAAAAGTGGTTTGCATGGGGAACTCATGCTATTGTGTGACAGGTGTGATAAGGGTTGGCATACATATTGTCTTTCCCCGCCATTGGAGAAAATTCCTCCAGGAAATTGGTATTGTTTCAACTGCTTGAATTCTGACAGGGACAGTTTTGGTTTTGTGCCTGGGAAGCATTACACATTGGAAGCTTTTAGACGCATAGCGGATCGGTCAAGGAGGAGATGGTTTGGATCAGGACCTGTTTCAAGGGTGCAAATTGAGAAGAAATTTTGGGATATTGTGGAGGGATTGGTTGGTGAGGTTGAGGTTATGTATGGAAATGACTTGGATACATCTGTCTATGGGAGTGGTTTCCCACGTGTAACTGATCAGAAACCAAAATCAATTGATGACAAATTATGGGAAGAATACTCAACTAACCCATGGAATCTTAATAACTTGCCTAAGTTGAAAGGCTCAATGCTTCGAGCTGTTCATCATAATATCACTGGTGTCATGGTACCCTGGCTATATATTGGGATGCTATTCTCATCCTTTTGCTGGCATTTTGAGGATCACTGCTTTTACTCAATGAATTATCTTCACTGGGGAGAGGCAAAGTGCTGGTACAGTGTGCCTGGTAGTCAAGCCACTGCTTTTGAGAAGGTGATGAAAAGCAGTCTTCCTGATCTTTTTGATGCACAACCtgatctgctttttcagcttgttactatgctaaacccatctgtcttgcaagaaaacggaGTTCCTGTCTATAGCATACTTCAGGAGCCTGGGAATTTTGTTATTACCTTCCCTAGATCTTATCATGGAGGTTTCAATCTTGGTTTAAATTGTGCAGAGGCAGTCAATTTTGCTCCTGCCGACTGGCTACCATATGGTGCTTTTGGAGCTGATCTGTATCAGCGGTATCACAAAACTGCTGTCTTGTCTCATGAGGAGCTTCTTTGTGTGGTAGCCCAGTATGGTGATGTTGATGGCAGAGTATCTTCTTATTTGAAGAAGGAAATGTTGAGAATATCAGATAAAGAAAAATCTTGGAGAGAGAAACTTTGGAAAAATGGTATTATTAAATCTTCTCGCATGGGTCCTCGAAAATGTCCCCAATATGTGGGAACTGAAGAAGATCCATCATGCCTTATATGCCAGCAATATCTCTATCTCTCTGCTGTTGTATGTGGTTGCAGGCCATCGACTTTTGTTTGTCTGGAGCACTGGGAACACCTCTGTGAGTGCAAAACTGTAAAACTACGTCTTCTCTATCGGCATTCACTTGCAGAATTATATGACTTGGCATTTTCTATGGACAAATATACTTCTGAGGACAAAGCTGAGTGTAGTAGTGTGAAAAGGAAGCCTTCATGTCTTAGTGCATTGACCAAAAAGGTGAAAGGTGGCTCCATTACTTTTGCTCAACTTGCTACAGAGTGGCTTCTGCAATCTAGTACTATTCTTCAGAATGTTTTTTTGCATGATGCATTTGTTACTGCACTAAGAAAAGCTGAACAATTTCTTTGGGCCGGTTCTGAGATGGATTCTGTTCGAGACATGGTAAAGAATTTGATTGAAGCTCAGAAGTGGGCAGAAGGGATAAGAGACTGTGCAACAAAAATTGAGTTATGGTTGTGTCATCAAGACTTTAATGTCAAGAAAGTTCATTTGGAATTCGTTGATGAGTTACTGAAGTTTAGTCCTGCACCATGCAATGAACCTCTTTATCATAAATTGAAGGACTACGCAGAGGAAGCAAGGTTGTTAATTCAGGAGATTGATACTGCTTTGTCAATGTGTTCAAATATGTCTGAGTTGGAACTTTTATACTCCAAAGCTTGTGGCTTACCCATCTATGTGAAAGAAAGTAAGAAATTGGAAGGGAAAATTTCTTCAACCAAGGCATGGCTGGATAACGTCAGAAAGTGCATCTCAGCAAGACAACCTGCTGCACTACATGTTGATGTTCTTTACAAGCTAAAAGCAGAGTTTGTGGATCTTCAAGTTCAACTCCTGGAGATAGACGTGCTCCAGAATCTATTAAGTCAAGTGGAATCTTGTAGTGCTCAATGTCATGATATGTTAGAAGGTCATATGAATCTCAAGAATGTTGGTTTGCTGCTTAAGGAATGGGACGGTTTCGCAGTTGATGTACCAGAGCTCAAGCTTCTAAGGCAATACCATTCAGATGCTGTTTCATGGGTTTCTCACTTCAATGATGTTTTAGGGAGAGTTCAGATGCAGGAAGATCAAAATAATGCAGTTGATGAATTGAAGAGCATTTTTGAAGAAGGTTTATCTTTGAAAATTCAAGTTGATGAGTTGCCATTAGTTGAGATTGAGCTGAAGAAGGCTAATTGCCGGGAAAAGGCTGTGAAGGCACATGATTTGAAGATGCCTTTAGAATTCATTCAGCAACTGTTGAAGGAGTCCACTATGCTTCAAATTGAGGGAGAGAAACAATTTGTCAATTTATCTTGTGTGCTTGCTGTTGCCATTCCTTGGGAGGAAAGGGCTAGAAAGATGCTTTCACACGAGGCTCCTATTTCAGACTTTGAGGACATGATCAGAGCTTCAGAAAACATATTTGGTATTCTTCCTTCACTTAATGATGTCAAGGATGCTTTATCCGAAGCTAATTCCTGGTTAAGGAATTCAAAGCCATATTTAGTCTCTTCTACGTGTGCTTCAAATTCTGTGCGGAAAGTAGAGGACTTGCAGATGTTGGTTTCTCAATCGAAGCATATTAAAGTATCTTTGGAAGAAAGAGGGATGCTTGAATTAGTTTTGAAGAATTGCAGAATATGGGGGTATGAAGCATGTTCTGTACTAGATGATGCTCAATGCTTATTGGATAATTCTTTGCATGAAATAAACAGTGGTTTAACTTGTAAAGTGGAAGATTTGATTGCAAGAATCCAATCTGCCATAGCATCTGGTGTATCACTTGGTTTTGACTTCAATGAGATTTCAAAACTCCAAGCATCGTATTCTACACTGCAATGGTGCAAAAGAGCCTTGTCTTTCTGCAATTGCTCTCCTTCTTTAGAGGACGTTTTGGAGGTTGCAGAAGGTCTTTCTCATTCCTCTGTATCTGGTGCTCTGTTGAAAGTATTGATTGATGGGTTTGAATGGCTTAGGAAAGCATTAGAGGGGATTTCTGGACCTCGCAGTTCTAGAAGATGTAAGTTGACTGACATACAAGATATTCTTACCGATTATCAGACTATTAATATGACCTTTACAGCAGTAAAATGTCAACTTGAAGATGCCATTGGAAAACATAAGTTGTGGCAAGGGCAAGTGCATCAATTTTTTGGTCTAAGCTCTAGAGAACGTTCTTGGTCTTCAATATTGCAGCTCAAGGAACATGGAGATACCATTGCCTTTAGTTGCTCCGAACTGGATTTGATTTTATCTGAAGTTGAGAAGGTGGAAAATTGGAAGAATAGATGCATGGATAAATTTAGAATGTTGGTCCAAAATGGAAATTCGCTACTTCATGCACTGGAGAAGATAAACCAGACTCTAGATAGATCATTGTTTATATATGACAAATTGCAAGATCTGAAGGAACAAAACCTATGTATATGCTGCTATGATGATTCTGAAGATCAGGAATTTCTTACTTGTTCCACTTGTATGGACTGCTATCATGTGAGGTGCGTTGGACTAACAGAAAAAGACGCAGGCATTGAAAACTACAAGTGCCCTTATTGTGAAATTTTGAGGGGTGAATTCCATTATCAGAATGGAGGTGCCCTCCTGAGGTTTGTGAAGAAGCGTGTTGAATTGAAAGTTCTTACTGAACTCATGTCTCATGCTGAGCATTTCTGTTTATGgattgatgaaaaagattttttgtgccaacttgttgagaaagccctttcatgcaaatCTTGCTTGAGAGAAATTGTGATCCTTGCATCAGCTAATGTTGATGAAGATATTAGCATTGTCTCCGAAAAATTGGCCACTGCTGTAAAGGCTAGCAAAGTGGCTATTGTCTATGATCAGCATGATACTTGTGACCTTGAGCTGACTTTAGCAAAAAACTTTTGGAAAATTCAAGTCAGTAGATTGTTAAATGGTGTACCAAAGCCCACTATCCAACAAATTCAGAAGCATCTGAAGGAGGGACAGGCTATGGACATATCACCTGAAGATCACTATATGTTGAAACTTACGAATGTGAATTGCTTGGGTTTGCAGTGGGCAGAACTAGCCAAAAAGGTGGCAACTGATTCAGGGGCACTCAGCCTGGATAAAGTTTTTGAACTTGTAGTGGAAGGTGAAAACTTGCCTGTTGATATGAACGAGGAACTAAGGACATTAAGGGCACGATGCATGCTTTATTGCATTTGTCGAAAGCCCTTTGATCCAGAAAGGATGATTGCATGTTATCATTGTAATGAGTGGTATCACTTTGATTGCATGAAATTGCCTTgcacagaagaggtctacatttgtcctgcatgtaacccgtgtacagaaggattgccttCAAACCATGACAGATTAACTAGTGGTAAATTTGAGGAGCCTAAAACCCCATCTCCGAGGCATTCAAATCCTAGAAAGAAACAGAAGAGAGATGTGCCCAGTCTCACTTGCAACATATTCGCTAGCAGGAATCAAGATAAGCTTAGGTATTCGAGTGGGATAGAATGTCTAAGGTGGCAAAATCGAAAGCCTTTCAGACGAGCAGCTAAGAAACGTGTTGAACTTCGAAGTCTTTCTCCATTTCTATGCATACAACGATAG 5490 0.3971 MGKGKPRAVEKGVVGPSLSVTSSTIPSGPVYYPTEDEFKDPLEYIYKIRPEAEPFGICKIVPPKTWKPPFALDLDTFTFPTKTQAIHKLQARPAACDSKTFDLDYSRFLRDHSGKKSRKRVVFEGEELDLCMLFNAVKRFGGYDKVVDGKKWGDVARFVRSSGKISDCAKHVLCQLYREHLCDYENFYNRMNQGTAQSCKKAVHDDHKSDHGVQSVVSKKNHKSVDGSNHKDSKVQEEEHDQICEQCKSGLHGELMLLCDRCDKGWHTYCLSPPLEKIPPGNWYCFNCLNSDRDSFGFVPGKHYTLEAFRRIADRSRRRWFGSGPVSRVQIEKKFWDIVEGLVGEVEVMYGNDLDTSVYGSGFPRVTDQKPKSIDDKLWEEYSTNPWNLNNLPKLKGSMLRAVHHNITGVMVPWLYIGMLFSSFCWHFEDHCFYSMNYLHWGEAKCWYSVPGSQATAFEKVMKSSLPDLFDAQPDLLFQLVTMLNPSVLQENGVPVYSILQEPGNFVITFPRSYHGGFNLGLNCAEAVNFAPADWLPYGAFGADLYQRYHKTAVLSHEELLCVVAQYGDVDGRVSSYLKKEMLRISDKEKSWREKLWKNGIIKSSRMGPRKCPQYVGTEEDPSCLICQQYLYLSAVVCGCRPSTFVCLEHWEHLCECKTVKLRLLYRHSLAELYDLAFSMDKYTSEDKAECSSVKRKPSCLSALTKKVKGGSITFAQLATEWLLQSSTILQNVFLHDAFVTALRKAEQFLWAGSEMDSVRDMVKNLIEAQKWAEGIRDCATKIELWLCHQDFNVKKVHLEFVDELLKFSPAPCNEPLYHKLKDYAEEARLLIQEIDTALSMCSNMSELELLYSKACGLPIYVKESKKLEGKISSTKAWLDNVRKCISARQPAALHVDVLYKLKAEFVDLQVQLLEIDVLQNLLSQVESCSAQCHDMLEGHMNLKNVGLLLKEWDGFAVDVPELKLLRQYHSDAVSWVSHFNDVLGRVQMQEDQNNAVDELKSIFEEGLSLKIQVDELPLVEIELKKANCREKAVKAHDLKMPLEFIQQLLKESTMLQIEGEKQFVNLSCVLAVAIPWEERARKMLSHEAPISDFEDMIRASENIFGILPSLNDVKDALSEANSWLRNSKPYLVSSTCASNSVRKVEDLQMLVSQSKHIKVSLEERGMLELVLKNCRIWGYEACSVLDDAQCLLDNSLHEINSGLTCKVEDLIARIQSAIASGVSLGFDFNEISKLQASYSTLQWCKRALSFCNCSPSLEDVLEVAEGLSHSSVSGALLKVLIDGFEWLRKALEGISGPRSSRRCKLTDIQDILTDYQTINMTFTAVKCQLEDAIGKHKLWQGQVHQFFGLSSRERSWSSILQLKEHGDTIAFSCSELDLILSEVEKVENWKNRCMDKFRMLVQNGNSLLHALEKINQTLDRSLFIYDKLQDLKEQNLCICCYDDSEDQEFLTCSTCMDCYHVRCVGLTEKDAGIENYKCPYCEILRGEFHYQNGGALLRFVKKRVELKVLTELMSHAEHFCLWIDEKDFLCQLVEKALSCKSCLREIVILASANVDEDISIVSEKLATAVKASKVAIVYDQHDTCDLELTLAKNFWKIQVSRLLNGVPKPTIQQIQKHLKEGQAMDISPEDHYMLKLTNVNCLGLQWAELAKKVATDSGALSLDKVFELVVEGENLPVDMNEELRTLRARCMLYCICRKPFDPERMIACYHCNEWYHFDCMKLPCTEEVYICPACNPCTEGLPSNHDRLTSGKFEEPKTPSPRHSNPRKKQKRDVPSLTCNIFASRNQDKLRYSSGIECLRWQNRKPFRRAAKKRVELRSLSPFLCIQR 1829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g00216 1829 CDD ARID 97 185 - -
Gma11g00216 1829 ProSiteProfiles Zinc finger PHD-type profile. 241 291 IPR019787 -
Gma11g00216 1829 SUPERFAMILY FYVE/PHD zinc finger 236 291 IPR011011 -
Gma11g00216 1829 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 245 290 IPR013083 -
Gma11g00216 1829 ProSiteProfiles ARID domain profile. 95 189 IPR001606 GO:0003677
Gma11g00216 1829 SUPERFAMILY FYVE/PHD zinc finger 1689 1741 IPR011011 -
Gma11g00216 1829 PANTHER LYSINE-SPECIFIC DEMETHYLASE 26 1197 - -
Gma11g00216 1829 CDD PHD_RSF1 244 288 - -
Gma11g00216 1829 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1679 1737 IPR013083 -
Gma11g00216 1829 MobiDBLite consensus disorder prediction 1749 1763 - -
Gma11g00216 1829 Pfam C5HC2 zinc finger 624 675 IPR004198 -
Gma11g00216 1829 Pfam JmjC domain, hydroxylase 414 530 IPR003347 -
Gma11g00216 1829 ProSiteProfiles JmjN domain profile. 28 69 IPR003349 -
Gma11g00216 1829 SMART JmjN_1 27 68 IPR003349 -
Gma11g00216 1829 Gene3D - 81 186 IPR036431 GO:0003677
Gma11g00216 1829 SMART PHD_3 1694 1736 IPR001965 -
Gma11g00216 1829 SMART PHD_3 1437 1483 IPR001965 -
Gma11g00216 1829 SMART PHD_3 243 289 IPR001965 -
Gma11g00216 1829 SUPERFAMILY Clavaminate synthase-like 366 562 - -
Gma11g00216 1829 SUPERFAMILY FYVE/PHD zinc finger 1434 1483 IPR011011 -
Gma11g00216 1829 Gene3D Cupin 29 532 - -
Gma11g00216 1829 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1427 1495 IPR013083 -
Gma11g00216 1829 SMART ARID_2 92 185 - -
Gma11g00216 1829 Pfam jmjN domain 29 62 IPR003349 -
Gma11g00216 1829 ProSitePatterns Zinc finger PHD-type signature. 1438 1482 IPR019786 -
Gma11g00216 1829 ProSitePatterns Zinc finger PHD-type signature. 1695 1735 IPR019786 -
Gma11g00216 1829 ProSiteProfiles JmjC domain profile. 381 547 IPR003347 -
Gma11g00216 1829 SUPERFAMILY ARID-like 78 199 IPR036431 GO:0003677
Gma11g00216 1829 MobiDBLite consensus disorder prediction 1749 1776 - -
Gma11g00216 1829 Pfam ARID/BRIGHT DNA binding domain 104 185 IPR001606 GO:0003677
Gma11g00216 1829 SMART cupin_9 381 547 IPR003347 -
Gma11g00216 1829 ProSitePatterns Zinc finger PHD-type signature. 244 288 IPR019786 -
Gma11g00216 1829 PANTHER LYSINE-SPECIFIC DEMETHYLASE LID 26 1197 - -
Gma11g00216 1829 SMART bright_3 96 190 IPR001606 GO:0003677
Gma11g00216 1829 Pfam PHD-finger 243 290 IPR019787 -
Gma11g00216 1829 Pfam PLU-1-like protein 941 1178 IPR013637 -
Gma11g00216 1829 Pfam PLU-1-like protein 1143 1398 IPR013637 -
Gma11g00216 1829 MobiDBLite consensus disorder prediction 210 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g00216 Gma-Chr11 1711285 1729264 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g00216 37 92 JUMONJI Transcription Factor Family AT4G20400 48.333 3.03e-09 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Gma11g00216 PLU-1 3e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g00216 K11446 - gmx:100789512 3747.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g00216 11 1711285 1729264 Gma11g00216 11 1711285 1729264 ECH
Gma01g02199 01 57226507 57248130 Gma11g00216 11 1711285 1729264 GST