Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g00205 ATGGGATTTCCAGTGGGGTACACAGAGTTGATGCTGCCGAAGGTGTTTCTGCAGGTGCTATCCGTATTGGGCTTGATAAGAAAACTCATCACCGTCCTCTTGTGCTACATGGGCTTCCACGATTTCTTCGAATCCGACATTGCGTGGCCGGAGAGGGCGCCGGAATTCCAGTCGGTGTGGGCGGTGCTCATAAGGGAAATCCTACCGGTGGTGAAGTTCTCGGAGATGGAGATGGAGATGGCGGAGGCGCCGGAGAGCTGCGCGGTGTGTCTGTACGAGTTCGAGGGAGAGGACGAGATCAGACGGCTGACGAACTGCCGCCACATATTCCACAGAGGGTGTCTGGACCGTTGGATGGGATACGATCAAAGAACGTGTCCCCTGTGTCGGACACCCTTCATACCCCACCATATGCAAGCTGCCTTCAATGATAGACTTTGGGCTGCTTCAGGGATTCCTGATTTCTATTACAATCATGAATGA 483 0.5362 MGFPVGYTELMLPKVFLQVLSVLGLIRKLITVLLCYMGFHDFFESDIAWPERAPEFQSVWAVLIREILPVVKFSEMEMEMAEAPESCAVCLYEFEGEDEIRRLTNCRHIFHRGCLDRWMGYDQRTCPLCRTPFIPHHMQAAFNDRLWAASGIPDFYYNHE 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g00205 160 SMART ring_2 87 129 IPR001841 -
Gma11g00205 160 CDD RING-H2 87 130 - -
Gma11g00205 160 Pfam Ring finger domain 86 130 IPR001841 -
Gma11g00205 160 ProSiteProfiles Zinc finger RING-type profile. 87 130 IPR001841 -
Gma11g00205 160 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 158 - -
Gma11g00205 160 SUPERFAMILY RING/U-box 86 136 - -
Gma11g00205 160 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 135 IPR013083 -
Gma11g00205 160 PANTHER BRH1 RING FINGER PROTEIN 1 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g00205 Gma-Chr11 1628716 1629671 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g00205 1 151 C3H Transcription Factor Family AT1G63840 57.962 1.14e-60 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g00205 K16281 - gmx:102665617 337.035
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g00205 11 1628716 1629671 Gma11g00205 11 1628716 1629671 ECH
Gma01g02213 01 57346032 57346587 Gma11g00205 11 1628716 1629671 GST
Gma11g00205 11 1628716 1629671 Gma05g02057 05 41811922 41812410 PCT
Gma11g00205 11 1628716 1629671 Gma08g00160 08 1362860 1363582 PCT