Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g00202 ATGGCTCGACAAGTGTGTGATGACAAATTATCAACTGGATTCTGCTACTCTGATGTATCATCGGGAAATCCAACGATGTTGGTGAACCAGATCCAAGGCTTTGTGTCAGACCCGGAGATGTACAACCTCACCACGGGCATGGAAATGATAGGGTTTCCAAAGAGTGACACCAACGCTGTCATGTGGAGAAGTTTCATCCCCGAACCGGGTCCTTCTTCTTCCAAAACCATCAACGATTCTTCCACCACTTTCTACCACCACGACTACAACAACAAGAATGCAGATTTCACACCAGCAGGGAATATTTCTGAAACAAGTGCCGAGAATCTAATCGTGGGAAATCACGATTCAGCCCCGTGGCAAGACAACAACAACAACAGATTTGACGATTCTTCTCTAAGGTGTGTGTTTCCTTGTGAAACCAACGAAAGGCCTAGCCAAGGTCTTTCACTCTCTCTTAGTTCAACCAACCCTTCCACTATCGGGTTGCAATCTTTTGAGCTAAGACAAACAGGCCATCATCCTGATTTTGTTTCGTCGAGTTCCAGAGAAGGGTTCTTTGGAAAACCAGTTTCTCTTCAACAGCAACAGATGTTGTCACAAGATGGGTATGTGAGTTCTAATTCTAAAGTTGCAAGTGTTTATCAACAAGGACATTTCCTGGTGAAGAACTCCAAGTTCTTGGTTCCTGCACAGGACCTTCTCAACGAGTTTTGTAGCCTTTGTGCAAAGCAAAGCGACTTGGGAAAGCCAACAAAATCGTTGAAGAAGCAGTGGGAAGATCAGGAAAATAACGGTGTCGGTTCTTCGAAGAAGCATTCTCTGACCTCTCTAGAGTTCGTGGAGTTGCAGAAGAGAAAGACAAAGCTGCTTTCGATGCTGGAAGAGGTTGACAGAAGGTACAAGCACTACCGGAATCAGATGAAGAGTGTGGTGTCATCGTTTGAAGCGGTGGCGGGGAATGGTGCTGCGACAGTGTACTCAGCTTTGGCGTTGAAGGCCATGTCGAGACATTTCAGGTGTTTGAAAGATGGGATTTTGTCGCAGATTCAGGCAACAAGAAAAGCCATGGGAGAGAAAGACCCAGTTGCACCAGGCACAACAAGGGGCGAAACGCCAAGACTTAAAGTCATTGACCAAACACTGAGACAACAAAGGGCGTTTCAGCAAATGAGCATGATGGAAACACATCCTTGGAGACCCCAACGTGGCCTTCCAGAGCGTGCCGTTTCAGTTCTTCGGGCTTGGCTCTTTGAACATTTTCTCCATCCGTACCCAAGCGATGTTGATAAGCATATTTTAGCACGCCAAACCGGTCTCTCGAGAGGCCAGGTTTCGAATTGGTTTATTAATGCAAGGGTGAGACTATGGAAGCCAATGGTAGAAGAAATGTACTTGGAGGAAGTGAAGGATCCTGAGAACAACATAGCTTCCTCAGAAGGGGCTACTGATCAAGACAATGATATAAACCCAAATAATGTTCAATACCCTCCACCTCCTTTATCATCAAGATCAGAGGATCAGAAGCCATCACTGGTTCGAATTGACTCCGAGTGTGCGTCCTCCATCATCAACAACCACAGTACCCCAGATAACAAAAACGATCCAAAGGGCCAAGAACAGTGCTTTGGGTCAGTGGAGCTTGATTTTTCATCATACACACACCACTCCTCGGGCATGGTTTCTTACGGAAGTAGTGATCAGAATGGGAACAACAACCAGAGTGGGGTGTCTTTGACGCTAGGGTTACAGCAACATGGGGTGAGTCTAGCGTTCCCGCCAGCAACACAGAGTTCACTGTACTATCCAAGGGACCAAATTGAAGATTGTCAACCAGTTCATCAGTACTCTCTTTTGGACGGTGAAGGACAAAACCTGCCTTACAGGAATTTGATGGGAGCACAGCTTCTGCATGACTTGGCAGGATAG 1929 0.4635 MARQVCDDKLSTGFCYSDVSSGNPTMLVNQIQGFVSDPEMYNLTTGMEMIGFPKSDTNAVMWRSFIPEPGPSSSKTINDSSTTFYHHDYNNKNADFTPAGNISETSAENLIVGNHDSAPWQDNNNNRFDDSSLRCVFPCETNERPSQGLSLSLSSTNPSTIGLQSFELRQTGHHPDFVSSSSREGFFGKPVSLQQQQMLSQDGYVSSNSKVASVYQQGHFLVKNSKFLVPAQDLLNEFCSLCAKQSDLGKPTKSLKKQWEDQENNGVGSSKKHSLTSLEFVELQKRKTKLLSMLEEVDRRYKHYRNQMKSVVSSFEAVAGNGAATVYSALALKAMSRHFRCLKDGILSQIQATRKAMGEKDPVAPGTTRGETPRLKVIDQTLRQQRAFQQMSMMETHPWRPQRGLPERAVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRGQVSNWFINARVRLWKPMVEEMYLEEVKDPENNIASSEGATDQDNDINPNNVQYPPPPLSSRSEDQKPSLVRIDSECASSIINNHSTPDNKNDPKGQEQCFGSVELDFSSYTHHSSGMVSYGSSDQNGNNNQSGVSLTLGLQQHGVSLAFPPATQSSLYYPRDQIEDCQPVHQYSLLDGEGQNLPYRNLMGAQLLHDLAG 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g00202 642 Pfam Homeobox KN domain 416 455 IPR008422 GO:0003677|GO:0006355
Gma11g00202 642 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 10 600 - -
Gma11g00202 642 PANTHER HOMEOBOX PROTEIN BEL1 HOMOLOG 10 600 - -
Gma11g00202 642 SMART prehox3 216 348 IPR006563 -
Gma11g00202 642 MobiDBLite consensus disorder prediction 475 512 - -
Gma11g00202 642 Pfam Associated with HOX 222 346 IPR006563 -
Gma11g00202 642 ProSiteProfiles 'Homeobox' domain profile. 396 459 IPR001356 GO:0003677
Gma11g00202 642 MobiDBLite consensus disorder prediction 252 271 - -
Gma11g00202 642 MobiDBLite consensus disorder prediction 476 492 - -
Gma11g00202 642 CDD homeodomain 399 460 IPR001356 GO:0003677
Gma11g00202 642 SMART HOX_1 399 463 IPR001356 GO:0003677
Gma11g00202 642 Gene3D - 402 464 - -
Gma11g00202 642 SUPERFAMILY Homeodomain-like 400 466 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g00202 Gma-Chr11 1592377 1595541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g00202 86 641 Homeobox Transcription Factor Family AT5G41410 46.003 1.03e-139 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Gma11g00202 POX 2e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g00202 - - gmx:100803088 1292.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g00202 11 1592377 1595541 Gma11g00202 11 1592377 1595541 ECH
Gma01g02215 01 57376929 57380785 Gma11g00202 11 1592377 1595541 GST
Gma11g00202 11 1592377 1595541 Gma05g02059 05 41842261 41844156 PCT
Gma11g00202 11 1592377 1595541 Gma08g00162 08 1391922 1395798 PCT
Gma05g00377 05 3520741 3524653 Gma11g00202 11 1592377 1595541 PCT