Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g00191 ATGGCTACGGTGCCGGAGAAGAAAGCGAAGGAAGCATTCTTCGACGACGAATTCGCTCTGGCCGTTGATCTCTACTCTGAAGCCATACGATTGGATCCCAACGACGCAAATCTCTTCGCGGACAGAGCCCAAGCCCATATCAAACTCAACGCTTTCACTGAAGCCGTTTCCGATGCCAACAAAGCCATCCAATTAAACCCTTCCTTGTCCAAGGCCTATCTTCGTAAAGGCACCGCTTGTATCAAACTCGAAGAATATCACACCGCCAAGGTAGCGCTTCAAAACGGTGCTGCTTTTGCCCAAGATGATTCACGATTCGCCAACTTGATTCAACAATGTGATCGCTTCATTGAAGCAGAGGAATCAAGTGGCCTTACTAGCACCTTATCATCAAATGGGTCCATAACATCTGTACCGTCTGGTAATGGTTCCCATTTCAGCAATAGAAATGATGGGATGACTAAAGAAGCTGAAGGAGACAGTTTGGTATCCCAAAAGAATGAAGCCACACTAAAAAGACCAAAATACAGgcatgaatactaccagaagccagaagaagtggttgtgacactatttgcaaaaggaatatcagCAAGCGATGTAGTTGTTGACTTCGGTGAACAGATGCTTAGTGTTACTATTGACGTTCCTGGCCAAGATGCCTATCATTACCAACCTCGATTGTTTGGGAAGATCATTCCCAACAACTGCAGAGTTGAGGTGTTGTCAACCAAAATTGAAATCCATCTTGCAAAAGCTGAAGCTATTAATTGGGCATCTCTGGAATATGGCAAGGATATGCTTCCCCCAATAATAAATAGGCCGATAGTTCAATCTGAAAGGTCTGCATATCCATCATCAAAACCGAGGACAAGAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAGGAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAGTAAATTGTTCCGTGATATTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCAAAGAAGGTGGAAGGCAGTGCTCCAGAAGAGGTGACAGGAAAAAGTATTCCAGTTCTTGGTCCACTTGTGGATTCTAATGACCAATCATCTCAATCTATTGTTTCTGGTTAA 1179 0.4131 MATVPEKKAKEAFFDDEFALAVDLYSEAIRLDPNDANLFADRAQAHIKLNAFTEAVSDANKAIQLNPSLSKAYLRKGTACIKLEEYHTAKVALQNGAAFAQDDSRFANLIQQCDRFIEAEESSGLTSTLSSNGSITSVPSGNGSHFSNRNDGMTKEAEGDSLVSQKNEATLKRPKYRHEYYQKPEEVVVTLFAKGISASDVVVDFGEQMLSVTIDVPGQDAYHYQPRLFGKIIPNNCRVEVLSTKIEIHLAKAEAINWASLEYGKDMLPPIINRPIVQSERSAYPSSKPRTRDWDKLEAQVKKEEKEEKLDGDAALSKLFRDIYQNADEDMRRAMSKSFLESNGTVLSTDWKEVGSKKVEGSAPEEVTGKSIPVLGPLVDSNDQSSQSIVSG 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g00191 392 CDD p23_CS_SGT1_like 179 262 - -
Gma11g00191 392 ProSiteProfiles CS domain profile. 173 262 IPR007052 -
Gma11g00191 392 PANTHER PROTEIN SGT1 HOMOLOG A 1 367 - -
Gma11g00191 392 MobiDBLite consensus disorder prediction 126 168 - -
Gma11g00191 392 Pfam CS domain 177 252 IPR007052 -
Gma11g00191 392 ProSiteProfiles TPR repeat profile. 36 69 IPR019734 GO:0005515
Gma11g00191 392 MobiDBLite consensus disorder prediction 354 392 - -
Gma11g00191 392 SUPERFAMILY TPR-like 7 113 IPR011990 GO:0005515
Gma11g00191 392 MobiDBLite consensus disorder prediction 378 392 - -
Gma11g00191 392 SUPERFAMILY HSP20-like chaperones 165 272 IPR008978 -
Gma11g00191 392 Pfam Tetratricopeptide repeat 39 68 IPR019734 GO:0005515
Gma11g00191 392 Gene3D - 174 265 IPR008978 -
Gma11g00191 392 SMART tpr_5 2 35 IPR019734 GO:0005515
Gma11g00191 392 SMART tpr_5 36 69 IPR019734 GO:0005515
Gma11g00191 392 SMART tpr_5 70 103 IPR019734 GO:0005515
Gma11g00191 392 Pfam SGS domain 292 370 IPR007699 -
Gma11g00191 392 ProSiteProfiles SGS domain profile. 283 374 IPR007699 -
Gma11g00191 392 Gene3D Tetratricopeptide repeat domain 2 123 IPR011990 GO:0005515
Gma11g00191 392 PANTHER PROTEIN SGT1 HOMOLOG 1 367 IPR044563 GO:0051087
Gma11g00191 392 MobiDBLite consensus disorder prediction 126 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g00191 Gma-Chr11 1501147 1506170 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g00191 12 108 U-box Gene Family AT3G07370 34.021 7.65e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g00191 K12795 - gmx:100784022 696.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g00191 11 1501147 1506170 Gma11g00191 11 1501147 1506170 ECH
Gma01g02224 01 57448796 57452939 Gma11g00191 11 1501147 1506170 GST