Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g00173 ATGACTGCGCCACCGACGAAGTACACTCACCACACCAAACTACTCATACCCCCCGAAGAAGACCCACCCAAACACCATTATCCCAGACTCGTCAGAATAACCGTCACTGACACCGACGCCACCGACTCCTCCAGCGACGAAGAAGAAGAACAAACATACCACTGCAACTCTTCCACGCGCCACCGACATAGGAAGTTCGTCAATGAGATTTCTATCGAGTCGTGCTCCAGCGAGAACGACGGCGTCGTTTCGAGGAAGCGAATTCGAAGAAGAAGCACCACTACGCCCAAAGCGACAAGAGCTTCAGACACTCGGCGCGTGTCCGACGGTAAGAAATTCCGCGGAGTGAGACAGAGGCCGTGGGGAAAATGGGCCGCGGAGATACGAGACCCAGCGCGACGCGTTCGGTTATGGTTGGGTACCTACGACACTGCTGAGGAAGCCGCTTTGGTGTACGACAACGCCGCCATTAAGCTGCGTGGACCCCACGCGCTCACCAATTTCATAACGCCACCTTCCGGGGAGGAAACTCATTGCAATAGCAAGAATATCTTTTCTCCCACTTCCGTGCTTCACTGTTGCTCCTTGTCCGAGGAAGCTGAGTCCGTTACGGCCAAAGACGATGACTACTCCTCGGTGTCGGAGAATAAGGTCAAAGCTGAGTCAGCGTTTCCGCCCGAAATAGATTTTGAGTTTCGAGCTTGTTCGACTGTGCCGGAGAGTCTGTTGTTCTGCGATGATGATTGGTCTAGTGAGTTTCTCACTTCTTATGAAGATTTCGGTTTCAAAAGTTGGCATACGGACAGAAATCGTGACTTTTTCCAAGATATCGACGATTTGTTTGTCTCGGATCCCCTCCTTGCTCTCTGA 870 0.5218 MTAPPTKYTHHTKLLIPPEEDPPKHHYPRLVRITVTDTDATDSSSDEEEEQTYHCNSSTRHRHRKFVNEISIESCSSENDGVVSRKRIRRRSTTTPKATRASDTRRVSDGKKFRGVRQRPWGKWAAEIRDPARRVRLWLGTYDTAEEAALVYDNAAIKLRGPHALTNFITPPSGEETHCNSKNIFSPTSVLHCCSLSEEAESVTAKDDDYSSVSENKVKAESAFPPEIDFEFRACSTVPESLLFCDDDWSSEFLTSYEDFGFKSWHTDRNRDFFQDIDDLFVSDPLLAL 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g00173 289 MobiDBLite consensus disorder prediction 1 56 - -
Gma11g00173 289 MobiDBLite consensus disorder prediction 84 110 - -
Gma11g00173 289 MobiDBLite consensus disorder prediction 13 32 - -
Gma11g00173 289 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 286 - -
Gma11g00173 289 SUPERFAMILY DNA-binding domain 112 168 IPR016177 GO:0003677
Gma11g00173 289 SMART rav1_2 112 175 IPR001471 GO:0003700|GO:0006355
Gma11g00173 289 Gene3D AP2/ERF domain 111 170 IPR036955 GO:0003700|GO:0006355
Gma11g00173 289 ProSiteProfiles AP2/ERF domain profile. 112 169 IPR001471 GO:0003700|GO:0006355
Gma11g00173 289 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF1-LIKE 4 286 - -
Gma11g00173 289 CDD AP2 111 168 IPR001471 GO:0003700|GO:0006355
Gma11g00173 289 Pfam AP2 domain 112 161 IPR001471 GO:0003700|GO:0006355
Gma11g00173 289 PRINTS Ethylene responsive element binding protein signature 113 124 IPR001471 GO:0003700|GO:0006355
Gma11g00173 289 PRINTS Ethylene responsive element binding protein signature 135 151 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g00173 Gma-Chr11 1340378 1341568 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g00173 1 289 AP2-EREBP Transcription Factor Family AT4G23750 39.130 1.98e-52 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma11g00173 AP2 4.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g00173 - - gmx:100779905 563.148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g00173 11 1340378 1341568 Gma11g00173 11 1340378 1341568 ECH
Gma01g02243 01 57609656 57610552 Gma11g00173 11 1340378 1341568 GST
Gma11g00173 11 1340378 1341568 Gma05g02090 05 42194639 42195643 PCT
Gma11g00173 11 1340378 1341568 Gma08g00198 08 1733118 1734352 PCT