Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g00139 ATGCAAGGAAGCGCGGCCGACGGAGAAGCCTTGGATTTCGAGCCTGAGGACGATGACTTGATGGACGAGGACGGCGCCCCCGACGCCGACGCCGACGCTTCTCCACCTCAACCTAAGCTCAAATCCGCCATCACCCCCGCCGCCACTTCCTCTCTCTCCGCCCCGAAGAAGACCAAGGGCCGCGGATTCCGCCAGGACACTGACGCCAACCGCAACACTCGCCTCTCCGGCACCGACTTCGACTCTCTCACCGCCGAGGGCGGCCCTGGCCCTCAGAGATCCATTGAGGGATGGATCATTCTGGTCACCGGCGTGCACGAGGAAGCGCAAGAGGACGATTTGCAAAATGCCTTTGGTGAATATGGAGAGATTAAGAACCTGCATTTGAATCTCGATCGCCGCACTGGTTTTGTCAAAGGTTATGCACTGATTGAATATGAGCGTGCTGAAGAAGCTCGAAATGCAATAGAGAATTTGAATGGATCTGAGCTTCTTACCCAAACCATTTATGTTGATTGGGCCTTCAGCAGTGGACCTATTAATGAGTCAGTCAGAAGAAAGAATGCTAGACCACCTCGTGAACGGCGTTCCAGGAGCCCCCGGAGGAGATACTGA 615 0.5528 MQGSAADGEALDFEPEDDDLMDEDGAPDADADASPPQPKLKSAITPAATSSLSAPKKTKGRGFRQDTDANRNTRLSGTDFDSLTAEGGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEARNAIENLNGSELLTQTIYVDWAFSSGPINESVRRKNARPPRERRSRSPRRRY 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g00139 204 CDD RRM_RBM8 92 179 IPR033744 GO:0003729
Gma11g00139 204 SMART rrm1_1 99 172 IPR000504 GO:0003723
Gma11g00139 204 MobiDBLite consensus disorder prediction 190 204 - -
Gma11g00139 204 SUPERFAMILY RNA-binding domain, RBD 91 202 IPR035979 GO:0003676
Gma11g00139 204 Gene3D - 41 190 IPR012677 -
Gma11g00139 204 MobiDBLite consensus disorder prediction 183 204 - -
Gma11g00139 204 PANTHER BNAA05G15240D PROTEIN 7 204 - -
Gma11g00139 204 PRINTS RNA binding motif protein 8 family signature 52 64 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Gma11g00139 204 PRINTS RNA binding motif protein 8 family signature 89 103 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Gma11g00139 204 PRINTS RNA binding motif protein 8 family signature 145 161 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Gma11g00139 204 PRINTS RNA binding motif protein 8 family signature 163 175 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Gma11g00139 204 PANTHER RNA-BINDING PROTEIN 8A 7 204 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Gma11g00139 204 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 98 176 IPR000504 GO:0003723
Gma11g00139 204 MobiDBLite consensus disorder prediction 1 91 - -
Gma11g00139 204 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 100 169 IPR000504 GO:0003723
Gma11g00139 204 MobiDBLite consensus disorder prediction 10 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g00139 Gma-Chr11 1076697 1079470 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g00139 100 174 Eukaryotic Initiation Factors Gene Family AT3G11400 29.333 9.79e-09 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g00139 K12876 - gmx:100527187 346.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g02275 01 57910893 57913811 Gma11g00139 11 1076697 1079470 GST